View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_high_18 (Length: 245)
Name: NF5175_high_18
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31514391 - 31514619
Alignment:
| Q |
1 |
ccctaattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtcca |
100 |
Q |
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| T |
31514391 |
ccctaattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatttcctcaagtcaatcacgtgattttttaattattcatgtcca |
31514490 |
T |
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| Q |
101 |
tctaatttgttgttgtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31514491 |
tctaatttgttgtggtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagt |
31514590 |
T |
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| Q |
201 |
cagaatgtacaagactccatgcgttgatg |
229 |
Q |
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| T |
31514591 |
cagaatgtacaagactccatgcgttgatg |
31514619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31494496 - 31494719
Alignment:
| Q |
1 |
ccctaattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtcca |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31494496 |
ccctaattcttcctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtcca |
31494595 |
T |
|
| Q |
101 |
tctaatttgttgttgtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagt |
200 |
Q |
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| T |
31494596 |
tctaatttgttgtggtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagt |
31494695 |
T |
|
| Q |
201 |
cagaatgtacaagactccatgcgt |
224 |
Q |
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| T |
31494696 |
cagaatgtacaagactccatgcgt |
31494719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31499882 - 31500105
Alignment:
| Q |
1 |
ccctaattctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtcca |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31499882 |
ccctaattcttcctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtcca |
31499981 |
T |
|
| Q |
101 |
tctaatttgttgttgtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31499982 |
tctaatttgttgtggtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagt |
31500081 |
T |
|
| Q |
201 |
cagaatgtacaagactccatgcgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
31500082 |
cagaatgtacaagactccatgcgt |
31500105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 31473300 - 31473515
Alignment:
| Q |
9 |
ctttctttgtcgttagtaacttatgttagtgtctctcttcagaaaccaatgtcctcaagtcaatcacgtgattttctaattattcatgtccatctaattt |
108 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31473300 |
ctttctttgtcgttagtaacttacgttagtgtctctcttcagaaaccaatttcctcaagtcaatcacgtgattttttaattattcatgtccatctaattt |
31473399 |
T |
|
| Q |
109 |
gttgttgtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagtcagaatgt |
208 |
Q |
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| T |
31473400 |
gttgtggtggaacaatgataaagaagtgtcaaggaattatatgaaccaatggtgcatttaggagaggggaccgcgtgaacatagagagaagtcagaatgt |
31473499 |
T |
|
| Q |
209 |
acaagactccatgcgt |
224 |
Q |
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|||||||||||||||| |
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| T |
31473500 |
acaagactccatgcgt |
31473515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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