View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_high_2 (Length: 566)
Name: NF5175_high_2
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 10820591 - 10821138
Alignment:
| Q |
1 |
tttgaagtaaagttcattaagaaaagtgttgtaaaagctctcaatcattttccaaagccattttcagtgattaatctctcaaatcttgatctactttctg |
100 |
Q |
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| T |
10820591 |
tttgaagtaaagttcattaagaaaagtgttgtaaaagctctcaatcattttccaaagccattttcagtgattaatctctcaaatcttgatctactttctg |
10820690 |
T |
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| Q |
101 |
gtcgttttccagttacatacttgtatttctacaaaaaaccaaaactaggtaacttcaaatcttttgttaacaatcttaaaacttctctagcacaaatact |
200 |
Q |
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| T |
10820691 |
gtcgttttccagttacatacttgtatttctacaaaaaaccaaaactaggtaacttcaaatcttttgttaacaatcttaaaacttctctagcacaaatact |
10820790 |
T |
|
| Q |
201 |
taatcattactatccctttgctggccacattgttgaaaatcataaaaccgacgaacctcaaatcgtttgtgataacaatggttcattagtcattgaagct |
300 |
Q |
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| T |
10820791 |
taatcattactatccctttgctggccacattgttcaaaatcataaaaccgacgaacctcaaatcatttgtgacaacaatggttcattagtcattgaagct |
10820890 |
T |
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| Q |
301 |
caagtaaatattcaactaagcaatttagatttttataatctcaatgaaactcttgaagaaaagatagtctcagttgaaccagatttccctttacaaattc |
400 |
Q |
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| T |
10820891 |
caagtaaatgttccactaagaaatttagatttttataatctcaatgaaactcttgaagaaaagatagtctcaattgaactagatttccctttacaaattc |
10820990 |
T |
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| Q |
401 |
aggtaacagaatttacttgtggtggaatttcaatagcatttacttttgatcatgcattaggtgatgcaacttcatttggtaaattcatttcatcttggtg |
500 |
Q |
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| T |
10820991 |
aggtaacagaatttacttgtggtggaatttcaatagcatttacttttgatcatgcattaggtgatgcaacttcatttggtaaattcatttcatcttggtg |
10821090 |
T |
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| Q |
501 |
tgaaatagcgcaaaataaaccgttatcatgcataccgaaccataaaag |
548 |
Q |
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| T |
10821091 |
tgaaatagcgcaaaataaaccgttatcatgcataccgaaccataaaag |
10821138 |
T |
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