View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5175_high_23 (Length: 233)

Name: NF5175_high_23
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5175_high_23
NF5175_high_23
[»] chr8 (7 HSPs)
chr8 (21-61)||(548004-548046)
chr8 (17-46)||(16422115-16422144)
chr8 (21-50)||(38045173-38045202)
chr8 (21-49)||(16872354-16872382)
chr8 (22-50)||(17949695-17949723)
chr8 (21-53)||(38896449-38896481)
chr8 (21-49)||(42827481-42827509)
[»] chr4 (11 HSPs)
chr4 (21-52)||(41987954-41987985)
chr4 (21-52)||(53690497-53690528)
chr4 (22-56)||(23621628-23621662)
chr4 (21-50)||(44622211-44622240)
chr4 (21-49)||(10125475-10125503)
chr4 (21-49)||(11248742-11248770)
chr4 (20-48)||(23511090-23511118)
chr4 (21-49)||(25367238-25367266)
chr4 (21-49)||(34447890-34447918)
chr4 (22-50)||(55968537-55968565)
chr4 (22-50)||(55984371-55984399)
[»] chr3 (6 HSPs)
chr3 (17-48)||(20393987-20394018)
chr3 (21-50)||(46336949-46336978)
chr3 (21-49)||(6466328-6466356)
chr3 (21-49)||(32100076-32100104)
chr3 (22-50)||(44976299-44976327)
chr3 (21-49)||(45674114-45674142)
[»] chr2 (8 HSPs)
chr2 (21-52)||(22061238-22061269)
chr2 (22-51)||(16198387-16198416)
chr2 (20-49)||(19576304-19576333)
chr2 (22-51)||(39407771-39407800)
chr2 (21-50)||(44421835-44421864)
chr2 (21-49)||(6579960-6579988)
chr2 (22-50)||(14309162-14309190)
chr2 (21-49)||(37985782-37985810)
[»] chr7 (9 HSPs)
chr7 (21-51)||(35421654-35421684)
chr7 (21-50)||(18235144-18235173)
chr7 (20-49)||(24161892-24161921)
chr7 (22-51)||(31502803-31502832)
chr7 (22-50)||(10453165-10453193)
chr7 (22-50)||(14183514-14183542)
chr7 (21-49)||(23059330-23059358)
chr7 (24-52)||(36669520-36669548)
chr7 (21-49)||(44481245-44481273)
[»] chr5 (7 HSPs)
chr5 (21-51)||(7414874-7414904)
chr5 (141-179)||(39119215-39119253)
chr5 (21-50)||(24780958-24780987)
chr5 (21-49)||(2606415-2606443)
chr5 (22-50)||(3633917-3633945)
chr5 (21-49)||(21195031-21195059)
chr5 (21-49)||(40041158-40041186)
[»] scaffold0166 (1 HSPs)
scaffold0166 (21-50)||(23341-23370)
[»] scaffold0236 (1 HSPs)
scaffold0236 (22-50)||(20267-20295)
[»] chr6 (3 HSPs)
chr6 (22-50)||(6835708-6835736)
chr6 (22-50)||(8493655-8493683)
chr6 (22-50)||(9225670-9225698)
[»] chr1 (4 HSPs)
chr1 (21-49)||(8711872-8711900)
chr1 (22-50)||(13387521-13387549)
chr1 (21-49)||(16705553-16705581)
chr1 (22-50)||(46398594-46398622)


Alignment Details
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 548046 - 548004
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa--atgttgttatc 61  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  548046 tcatacaatttgggacggagggagtattaattatgttgttatc 548004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 16422115 - 16422144
Alignment:
Q  17 aatatcatacaatttgggacggagggagta 46  Q
    ||||||||||||||||||||||||||||||    
T  16422115 aatatcatacaatttgggacggagggagta 16422144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 38045173 - 38045202
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa 50  Q
    ||||||||||||||||||||||||||||||    
T  38045173 tcatacaatttgggacggagggagtattaa 38045202  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 16872382 - 16872354
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  16872382 tcatacaatttgggacggagggagtatta 16872354  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 17949695 - 17949723
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  17949695 catacaatttgggacggagggagtattaa 17949723  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 38896481 - 38896449
Alignment:
Q  21 tcatacaatttgggacggagggagtattaaatg 53  Q
    |||||||||||||||||||||||||||| ||||    
T  38896481 tcatacaatttgggacggagggagtattgaatg 38896449  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 42827509 - 42827481
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  42827509 tcatacaatttgggacggagggagtatta 42827481  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 41987985 - 41987954
Alignment:
Q  21 tcatacaatttgggacggagggagtattaaat 52  Q
    ||||||||||||||||||||||||||||||||    
T  41987985 tcatacaatttgggacggagggagtattaaat 41987954  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 53690497 - 53690528
Alignment:
Q  21 tcatacaatttgggacggagggagtattaaat 52  Q
    ||||||||||||||||||||||||||||||||    
T  53690497 tcatacaatttgggacggagggagtattaaat 53690528  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 23621662 - 23621628
Alignment:
Q  22 catacaatttgggacggagggagtattaaatgttg 56  Q
    ||||||||||||||||||||||||||||| |||||    
T  23621662 catacaatttgggacggagggagtattaattgttg 23621628  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 44622240 - 44622211
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa 50  Q
    ||||||||||||||||||||||||||||||    
T  44622240 tcatacaatttgggacggagggagtattaa 44622211  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 10125503 - 10125475
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  10125503 tcatacaatttgggacggagggagtatta 10125475  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 11248770 - 11248742
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  11248770 tcatacaatttgggacggagggagtatta 11248742  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 23511118 - 23511090
Alignment:
Q  20 atcatacaatttgggacggagggagtatt 48  Q
    |||||||||||||||||||||||||||||    
T  23511118 atcatacaatttgggacggagggagtatt 23511090  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 25367266 - 25367238
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  25367266 tcatacaatttgggacggagggagtatta 25367238  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 34447890 - 34447918
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  34447890 tcatacaatttgggacggagggagtatta 34447918  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 55968565 - 55968537
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  55968565 catacaatttgggacggagggagtattaa 55968537  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 55984371 - 55984399
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  55984371 catacaatttgggacggagggagtattaa 55984399  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 20394018 - 20393987
Alignment:
Q  17 aatatcatacaatttgggacggagggagtatt 48  Q
    ||||||||||||||||||||||||||||||||    
T  20394018 aatatcatacaatttgggacggagggagtatt 20393987  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 46336949 - 46336978
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa 50  Q
    ||||||||||||||||||||||||||||||    
T  46336949 tcatacaatttgggacggagggagtattaa 46336978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 6466356 - 6466328
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  6466356 tcatacaatttgggacggagggagtatta 6466328  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 32100104 - 32100076
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  32100104 tcatacaatttgggacggagggagtatta 32100076  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 44976327 - 44976299
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  44976327 catacaatttgggacggagggagtattaa 44976299  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 45674142 - 45674114
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  45674142 tcatacaatttgggacggagggagtatta 45674114  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 22061238 - 22061269
Alignment:
Q  21 tcatacaatttgggacggagggagtattaaat 52  Q
    ||||||||||||||||||||||||||||||||    
T  22061238 tcatacaatttgggacggagggagtattaaat 22061269  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 16198416 - 16198387
Alignment:
Q  22 catacaatttgggacggagggagtattaaa 51  Q
    ||||||||||||||||||||||||||||||    
T  16198416 catacaatttgggacggagggagtattaaa 16198387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 19576304 - 19576333
Alignment:
Q  20 atcatacaatttgggacggagggagtatta 49  Q
    ||||||||||||||||||||||||||||||    
T  19576304 atcatacaatttgggacggagggagtatta 19576333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 39407800 - 39407771
Alignment:
Q  22 catacaatttgggacggagggagtattaaa 51  Q
    ||||||||||||||||||||||||||||||    
T  39407800 catacaatttgggacggagggagtattaaa 39407771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 44421835 - 44421864
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa 50  Q
    ||||||||||||||||||||||||||||||    
T  44421835 tcatacaatttgggacggagggagtattaa 44421864  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 6579960 - 6579988
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  6579960 tcatacaatttgggacggagggagtatta 6579988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 14309162 - 14309190
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  14309162 catacaatttgggacggagggagtattaa 14309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 37985782 - 37985810
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  37985782 tcatacaatttgggacggagggagtatta 37985810  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 35421684 - 35421654
Alignment:
Q  21 tcatacaatttgggacggagggagtattaaa 51  Q
    |||||||||||||||||||||||||||||||    
T  35421684 tcatacaatttgggacggagggagtattaaa 35421654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 18235144 - 18235173
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa 50  Q
    ||||||||||||||||||||||||||||||    
T  18235144 tcatacaatttgggacggagggagtattaa 18235173  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 24161892 - 24161921
Alignment:
Q  20 atcatacaatttgggacggagggagtatta 49  Q
    ||||||||||||||||||||||||||||||    
T  24161892 atcatacaatttgggacggagggagtatta 24161921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 31502832 - 31502803
Alignment:
Q  22 catacaatttgggacggagggagtattaaa 51  Q
    ||||||||||||||||||||||||||||||    
T  31502832 catacaatttgggacggagggagtattaaa 31502803  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 10453165 - 10453193
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  10453165 catacaatttgggacggagggagtattaa 10453193  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 14183514 - 14183542
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  14183514 catacaatttgggacggagggagtattaa 14183542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 23059330 - 23059358
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  23059330 tcatacaatttgggacggagggagtatta 23059358  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 36669548 - 36669520
Alignment:
Q  24 tacaatttgggacggagggagtattaaat 52  Q
    |||||||||||||||||||||||||||||    
T  36669548 tacaatttgggacggagggagtattaaat 36669520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 44481245 - 44481273
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  44481245 tcatacaatttgggacggagggagtatta 44481273  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 7414874 - 7414904
Alignment:
Q  21 tcatacaatttgggacggagggagtattaaa 51  Q
    |||||||||||||||||||||||||||||||    
T  7414874 tcatacaatttgggacggagggagtattaaa 7414904  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 39119253 - 39119215
Alignment:
Q  141 tttatggctcttatgttgctgagttaattttaatgtgtt 179  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  39119253 tttatgcctcttatgttgctaagttaattttaatgtgtt 39119215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 24780987 - 24780958
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa 50  Q
    ||||||||||||||||||||||||||||||    
T  24780987 tcatacaatttgggacggagggagtattaa 24780958  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 2606443 - 2606415
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  2606443 tcatacaatttgggacggagggagtatta 2606415  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 3633945 - 3633917
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  3633945 catacaatttgggacggagggagtattaa 3633917  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 21195059 - 21195031
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  21195059 tcatacaatttgggacggagggagtatta 21195031  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 40041158 - 40041186
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  40041158 tcatacaatttgggacggagggagtatta 40041186  T

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Target: scaffold0166 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 23370 - 23341
Alignment:
Q  21 tcatacaatttgggacggagggagtattaa 50  Q
    ||||||||||||||||||||||||||||||    
T  23370 tcatacaatttgggacggagggagtattaa 23341  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 20295 - 20267
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  20295 catacaatttgggacggagggagtattaa 20267  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 6835736 - 6835708
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  6835736 catacaatttgggacggagggagtattaa 6835708  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 8493655 - 8493683
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  8493655 catacaatttgggacggagggagtattaa 8493683  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 9225670 - 9225698
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  9225670 catacaatttgggacggagggagtattaa 9225698  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 8711900 - 8711872
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  8711900 tcatacaatttgggacggagggagtatta 8711872  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 13387549 - 13387521
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  13387549 catacaatttgggacggagggagtattaa 13387521  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 16705553 - 16705581
Alignment:
Q  21 tcatacaatttgggacggagggagtatta 49  Q
    |||||||||||||||||||||||||||||    
T  16705553 tcatacaatttgggacggagggagtatta 16705581  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 46398622 - 46398594
Alignment:
Q  22 catacaatttgggacggagggagtattaa 50  Q
    |||||||||||||||||||||||||||||    
T  46398622 catacaatttgggacggagggagtattaa 46398594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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