View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_high_4 (Length: 387)
Name: NF5175_high_4
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 37979765 - 37980132
Alignment:
| Q |
1 |
tgacttccagcataatatagttcatccaaacggacaaaattgtacacctgaaaattgtttgtagaaaataataataatcaatttattttcattccaaaag |
100 |
Q |
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| T |
37979765 |
tgacttccagcataatatagttcatccaaacggacaaaattgtacacctgaaaattgtttgtagaaaataataataatcaatttattttcatttcaaaag |
37979864 |
T |
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| Q |
101 |
attaaaaaat---ggtagaaaagaaattgaaagagtcaaagtgtactttatctatgcatcttccagtaacaattgcagtaggaaaacaccttgcaagttt |
197 |
Q |
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| T |
37979865 |
attaaaaaataatgatagaaaagaaattgaaagagtcaaagtgtactttatctatgcatcttccagtaacaattgcagtaggaaaacaccttgcaagttt |
37979964 |
T |
|
| Q |
198 |
cttaactgttttcctcatctgatatatatgtgatagtacaatttattagaaaacagatttatttaaaggatatatataaacctgtttttataaacaaaga |
297 |
Q |
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| T |
37979965 |
cttaactgttttcctcatctgatatatatgtgatagtacaatttattagaaaaaagatttatttaaagg----atataaacctg-ttttataaacaaaga |
37980059 |
T |
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| Q |
298 |
ctaaccgattcagacatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaa |
370 |
Q |
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| T |
37980060 |
ctaaccgattcagacatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaa |
37980132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 13311387 - 13311328
Alignment:
| Q |
311 |
acatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaa |
370 |
Q |
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| T |
13311387 |
acatgaaagcacagtcagggttatccacaatgggtgaaaatgttccatcatagtccaaaa |
13311328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 13309491 - 13309431
Alignment:
| Q |
310 |
gacatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcatagtccaaaa |
370 |
Q |
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| T |
13309491 |
gacatgaaagcacagtcagaattatccacaattggtgaaaaagttccatcatagtccaaaa |
13309431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 41342753 - 41342805
Alignment:
| Q |
310 |
gacatgaaagcacggtcagggtcatcgacaataggtgacaaagtaccatcata |
362 |
Q |
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| T |
41342753 |
gacatgaaagcacgatcagggtcatttacaatgggtgataaggtaccatcata |
41342805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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