View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_high_5 (Length: 340)
Name: NF5175_high_5
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 43574222 - 43574532
Alignment:
| Q |
15 |
tatatagcccaaatattcacaaatgtttctctagtttgttcacatgatatttactttttgactgttcctttaccttgtctttgcacttcgcgaacccact |
114 |
Q |
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| T |
43574222 |
tatatagcccaaatattcacaaatgtttctctagtttgttcacatgatatttactttttgactgttccgttaccttgtctttgcacttcgcgaacccact |
43574321 |
T |
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| Q |
115 |
tctttgcccgtacaaaagaatcctgagaaagaaaatgcaccatttatttcttctgatatgatattttttagatgaaaatatttgtagcacagatgcaata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43574322 |
tctttgcccgtacaaaagaatcctgagaaagaaaatgcaccatttatttcttctgatatgatattttttagatgaaaatatttgtagcacggatgcaata |
43574421 |
T |
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| Q |
215 |
acataaacattacacattctattatatatcattcatgacaatcaattattgttatctttattgaacagcttcgtgacaggtcatgtgaacgaaaattctt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43574422 |
acataaacattacacattctattatatatcattcatgacaatcaattattgttatctttattgaacagcttcgtgacaggtcatgcgaacgaaaattctt |
43574521 |
T |
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| Q |
315 |
tgctttcaagt |
325 |
Q |
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||||||||||| |
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| T |
43574522 |
tgctttcaagt |
43574532 |
T |
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