View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_low_11 (Length: 274)
Name: NF5175_low_11
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 252
Target Start/End: Original strand, 1396236 - 1396486
Alignment:
| Q |
3 |
tcttctattggatttggatttccatcactcaaaaccctttcgttgcaactcattaaattaaatggaattcaagatttcatgttgctgctagctggatctc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1396236 |
tcttctattggatttggatttccatcactcaaaaccctttcgttgcaactcattaaattaaatggaattcaagatttcatgttgcttctagctggatctc |
1396335 |
T |
|
| Q |
103 |
taattctcgaggatctacgattgtctgatatatgcattcattctgaggaatagcttgattctcttacaattcaatagtttgaaacctta-agcttaccca |
201 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
1396336 |
taattctcgaggatctacgattgtctgatatatacattcattctgaggaatagcttgattctcttaaaattcaatagtttgaaaccttatagcttaccca |
1396435 |
T |
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| Q |
202 |
aattgactaaagcagatatcagtcaatgtttgtattcatgttatacgatga |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1396436 |
aattgactaaagcagatatcagtcaatgtttgtattcatgttatatgatga |
1396486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 1407236 - 1407497
Alignment:
| Q |
1 |
tttcttctattggatttggatttccatcactcaaaaccctttcgttgcaactcatta------aattaaatggaattcaagatttcatgttgctgctagc |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
1407236 |
tttcttctattggatttggatttccatcactcaaaaccctttcattgcaactcattaaaattaaattaaatggaattcaagatttcatgttgcttctagc |
1407335 |
T |
|
| Q |
95 |
tggatctctaattctcgaggatctacgattgtctgatatatgcattcattctgaggaatagcttgattctcttacaattcaatagtttgaaaccttaagc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
1407336 |
tggatctctaattctcgaggatctacgattgtctgatatatacattcattctaaggaatagcttgattctcttaccattcaatagttcgaaaccttaagc |
1407435 |
T |
|
| Q |
195 |
ttacccaaattgactaaagcagatatcagtcaa----tgtttgtattcatgttatacgatga |
252 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
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| T |
1407436 |
ttacccaaattgactaaagcagatatcggtcaatgtttgtttgtattcatgttatatgatga |
1407497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1025594 - 1025559
Alignment:
| Q |
1 |
tttcttctattggatttggatttccatcactcaaaa |
36 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
1025594 |
tttcttccattggatttggatttccatcactcaaaa |
1025559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35767616 - 35767662
Alignment:
| Q |
1 |
tttcttctattggatttggatttccatcactcaaaaccctttcgttg |
47 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
35767616 |
tttcttcaattggatttggatttccatcactcaaaaccctttggttg |
35767662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 8316029 - 8316067
Alignment:
| Q |
9 |
attggatttggatttccatcactcaaaaccctttcgttg |
47 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
8316029 |
attggatttggatttccatcactcaaaaccctttggttg |
8316067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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