View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_low_14 (Length: 253)
Name: NF5175_low_14
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_low_14 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 3299775 - 3300027
Alignment:
| Q |
2 |
gaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagt |
101 |
Q |
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| T |
3299775 |
gaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaatccgaaaaacaagt |
3299874 |
T |
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| Q |
102 |
taacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcacttctt |
201 |
Q |
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| T |
3299875 |
taacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcacttctt |
3299974 |
T |
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| Q |
202 |
cttcaatgctgactttg-ttttattaagtcctccgctgggatccttcttctcc |
253 |
Q |
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| T |
3299975 |
cttcaatgctgactttgtttttattaagtcctccgctgggatccttcttctcc |
3300027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 43067938 - 43067698
Alignment:
| Q |
16 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
115 |
Q |
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| T |
43067938 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagactagaa |
43067839 |
T |
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| Q |
116 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcct---tggatagatcttcctgcacggttcacttcttcttcaatgctg |
212 |
Q |
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| T |
43067838 |
atagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtagatagatcatcctgctcggttcacttcttcttcaatgctg |
43067739 |
T |
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| Q |
213 |
actttgttttattaagtcctccgctgggatccttcttctcc |
253 |
Q |
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| T |
43067738 |
acttggtctgcttaagtcctccactgggatccttcttctcc |
43067698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 43082897 - 43083137
Alignment:
| Q |
16 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
115 |
Q |
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| T |
43082897 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagacgagaa |
43082996 |
T |
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| Q |
116 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcc---ttggatagatcttcctgcacggttcacttcttcttcaatgctg |
212 |
Q |
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| T |
43082997 |
atagaaatactaaggacccaagaccatttattgtaataactatgatatgcttcccaagtagatagaccatcctgctcagttcacttcttcttcaatgctg |
43083096 |
T |
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| Q |
213 |
actttgttttattaagtcctccgctgggatccttcttctcc |
253 |
Q |
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| T |
43083097 |
acttggtctgcttaagtcctccactgggatccttcttctcc |
43083137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 43044053 - 43044293
Alignment:
| Q |
16 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
115 |
Q |
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| T |
43044053 |
ctgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagaagagaa |
43044152 |
T |
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| Q |
116 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttgg---atagatcttcctgcacggttcacttcttcttcaatgctg |
212 |
Q |
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| T |
43044153 |
atagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtaaatagatcatcctgctcggttcacttcttcttcaatgctg |
43044252 |
T |
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| Q |
213 |
actttgttttattaagtcctccgctgggatccttcttctcc |
253 |
Q |
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| T |
43044253 |
acttggtctgcttaagtcctccactgggatccttcttctcc |
43044293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 43079958 - 43079856
Alignment:
| Q |
3 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
102 |
Q |
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| T |
43079958 |
aaaagaaaaagccttgccacagtcgatatagaacccaatcctgggaacaagggctgcgagacgacggtgcagacttgacacttaatctgaaaaacaagtt |
43079859 |
T |
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| Q |
103 |
aac |
105 |
Q |
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||| |
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| T |
43079858 |
aac |
43079856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 38139079 - 38139007
Alignment:
| Q |
15 |
cctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
87 |
Q |
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| T |
38139079 |
cctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa |
38139007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 43079802 - 43079762
Alignment:
| Q |
173 |
gatagatcttcctgcacggttcacttcttcttcaatgctga |
213 |
Q |
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| T |
43079802 |
gatagatcatcctgcacggttcccttattcttcaatgctga |
43079762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 4230525 - 4230618
Alignment:
| Q |
17 |
tgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagac |
110 |
Q |
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| T |
4230525 |
tgccaccgtcgatctagaacccagttctgggaacaaaagctgggagatgacggtgcagacttcacacttaatccaaaaaacaacttaacaagac |
4230618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 19965696 - 19965623
Alignment:
| Q |
3 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagac |
76 |
Q |
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| T |
19965696 |
aaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgcaagacaacagtgcagac |
19965623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 4618729 - 4618826
Alignment:
| Q |
3 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
102 |
Q |
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| T |
4618729 |
aaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtt |
4618826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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