View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_low_16 (Length: 249)
Name: NF5175_low_16
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2114419 - 2114664
Alignment:
| Q |
1 |
tcctagcttcaccaccagtccacaaaaccatcttgtaccgttggtaatatctatgagcaaattctaatgccaattcagattttccaattccagaaactcc |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2114419 |
tcctagcttcaccaccaatccacaaaaccatcttgtacctttggtaatatctatgagcaaattctaatgccaattcagattttccaattccagaaactcc |
2114518 |
T |
|
| Q |
101 |
gctaatgcaaatcacactactactacacaaactcttgtagttgtagcttccactttttgacttcttattcttcaatctcttcaatgaactgttacctatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2114519 |
gctaatgcaaatcacactactactacacaaactcttgtagttgtagcttccactttttgacttcttattcttcaatctcttcaatgaactgttacctatc |
2114618 |
T |
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| Q |
201 |
atcggttgttcaatccaagcctctaaatttggttctctgctcctcc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
2114619 |
atcggttgttcaatccaagcctctaaatttggttctttgttcctcc |
2114664 |
T |
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