View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_low_19 (Length: 242)
Name: NF5175_low_19
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 1396194 - 1396029
Alignment:
| Q |
1 |
taacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaataatgtagggttcacccaccatttgtgtgt |
100 |
Q |
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| T |
1396194 |
taacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaataatgtagggttcacccaccatttgt--gt |
1396097 |
T |
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| Q |
101 |
gtatatcaaaatctaaactagatttggtttcttttcagccacnnnnnnngatatcagtttaattttat |
168 |
Q |
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| T |
1396096 |
gtatatcaaaatctaaaccagatttggtttcttttcagccacaaaaatggatatcagtttaattttat |
1396029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 1407213 - 1407076
Alignment:
| Q |
1 |
taacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaataatgtagggttcacccaccatttgtgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1407213 |
taacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaataatgtagggttcacccaccattt----gt |
1407118 |
T |
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| Q |
101 |
gtatatcaaaatctaaactagatttggtttcttttcagccac |
142 |
Q |
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| T |
1407117 |
gtatatcaaaatctaaaccagatttggtttcttttcagccac |
1407076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 1407064 - 1407021
Alignment:
| Q |
181 |
acactacctgttccttgtgctaaagacaacaacgtgaatttcgt |
224 |
Q |
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| T |
1407064 |
acactacctgttccttgtgctaaagacaacaacgtgaatttcgt |
1407021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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