View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5175_low_24 (Length: 232)

Name: NF5175_low_24
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5175_low_24
NF5175_low_24
[»] chr6 (5 HSPs)
chr6 (19-232)||(31494264-31494477)
chr6 (19-232)||(31499650-31499863)
chr6 (19-175)||(31514175-31514331)
chr6 (19-175)||(31473081-31473236)
chr6 (202-232)||(18771777-18771807)
[»] chr7 (3 HSPs)
chr7 (202-232)||(30891279-30891309)
chr7 (202-232)||(35357702-35357732)
chr7 (202-231)||(15954133-15954162)
[»] chr5 (2 HSPs)
chr5 (202-232)||(38293624-38293654)
chr5 (202-230)||(36428283-36428311)
[»] chr4 (5 HSPs)
chr4 (202-232)||(29581968-29581998)
chr4 (202-232)||(32846029-32846059)
chr4 (202-232)||(33491537-33491567)
chr4 (204-232)||(352850-352878)
chr4 (204-232)||(56104779-56104807)
[»] chr3 (2 HSPs)
chr3 (202-232)||(16136998-16137028)
chr3 (202-232)||(40021080-40021110)
[»] chr2 (4 HSPs)
chr2 (202-232)||(6945341-6945371)
chr2 (202-232)||(42849703-42849733)
chr2 (202-231)||(38064660-38064689)
chr2 (202-230)||(3260965-3260993)
[»] chr1 (5 HSPs)
chr1 (202-232)||(24230946-24230976)
chr1 (202-232)||(32710120-32710150)
chr1 (202-232)||(34038540-34038570)
chr1 (202-232)||(51787844-51787874)
chr1 (202-230)||(45767686-45767714)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 31494264 - 31494477
Alignment:
Q  19 tatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctcgttttaaattgtaaatcttacatgaatttaaggttggac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31494264 tatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcaatctcgttttaaattgtaaatcttacatgaatttaaggttggac 31494363  T
Q  119 aaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagnnnnnnntatctacctataatattagtcaaatatattggatgt 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||| || |||    
T  31494364 aaacaataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagaaaaaaatatctacccataatattagtcaaatatatcgggtgt 31494463  T
Q  219 accatagaatttgc 232  Q
    ||||||||||||||    
T  31494464 accatagaatttgc 31494477  T

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Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 31499650 - 31499863
Alignment:
Q  19 tatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctcgttttaaattgtaaatcttacatgaatttaaggttggac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31499650 tatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcaatctcgttttaaattgtaaatcttacatgaatttaaggttggac 31499749  T
Q  119 aaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagnnnnnnntatctacctataatattagtcaaatatattggatgt 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||  | |||    
T  31499750 aaacaataataagcattaaggtcatgttttgtcaatacaactcatccataacaagagaaaaaaatatctacccataatattagtcaaatatatcaggtgt 31499849  T
Q  219 accatagaatttgc 232  Q
    ||||||||||||||    
T  31499850 accatagaatttgc 31499863  T

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Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 31514175 - 31514331
Alignment:
Q  19 tatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctcgttttaaattgtaaatcttacatgaatttaaggttggac 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31514175 tatatatagactacaatagtaagaacatatttaatctcaaatattcacaaatttcactctcgttttaaattgtaaatcttacatgaattcaaggttggac 31514274  T
Q  119 aaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagag 175  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31514275 aaacgataataagcattaaggtcatgttttgtcgatacaactcatccataacaagag 31514331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 31473081 - 31473236
Alignment:
Q  19 tatatatagactacgatagtaagaacatatttaatctcaaatattcacaaatttcactctcgttttaaattgtaaatcttacatgaatttaaggttggac 118  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31473081 tatatata-actaccatagtaagaacatatttaatctcaaatattcccaaatttcactctcattttaaattgtaaatcttacatgaatttaaggttggac 31473179  T
Q  119 aaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagag 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31473180 aaacgataataagcattaaggtcatgttttgtcaatacaactcatccataacaagag 31473236  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 18771807 - 18771777
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  18771807 tcaaatatattggatgtaccatagaatttgc 18771777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 30891309 - 30891279
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  30891309 tcaaatatattggatgtaccatagaatttgc 30891279  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 35357732 - 35357702
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  35357732 tcaaatatattggatgtaccatagaatttgc 35357702  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 15954162 - 15954133
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttg 231  Q
    ||||||||||||||||||||||||||||||    
T  15954162 tcaaatatattggatgtaccatagaatttg 15954133  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 38293654 - 38293624
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  38293654 tcaaatatattggatgtaccatagaatttgc 38293624  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 36428283 - 36428311
Alignment:
Q  202 tcaaatatattggatgtaccatagaattt 230  Q
    |||||||||||||||||||||||||||||    
T  36428283 tcaaatatattggatgtaccatagaattt 36428311  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 29581998 - 29581968
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  29581998 tcaaatatattggatgtaccatagaatttgc 29581968  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 32846029 - 32846059
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  32846029 tcaaatatattggatgtaccatagaatttgc 32846059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 33491537 - 33491567
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  33491537 tcaaatatattggatgtaccatagaatttgc 33491567  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 352850 - 352878
Alignment:
Q  204 aaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||    
T  352850 aaatatattggatgtaccatagaatttgc 352878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 56104779 - 56104807
Alignment:
Q  204 aaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||    
T  56104779 aaatatattggatgtaccatagaatttgc 56104807  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 16136998 - 16137028
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  16136998 tcaaatatattggatgtaccatagaatttgc 16137028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 40021110 - 40021080
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  40021110 tcaaatatattggatgtaccatagaatttgc 40021080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 6945371 - 6945341
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  6945371 tcaaatatattggatgtaccatagaatttgc 6945341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 42849703 - 42849733
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  42849703 tcaaatatattggatgtaccatagaatttgc 42849733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 38064689 - 38064660
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttg 231  Q
    ||||||||||||||||||||||||||||||    
T  38064689 tcaaatatattggatgtaccatagaatttg 38064660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 3260993 - 3260965
Alignment:
Q  202 tcaaatatattggatgtaccatagaattt 230  Q
    |||||||||||||||||||||||||||||    
T  3260993 tcaaatatattggatgtaccatagaattt 3260965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 24230946 - 24230976
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  24230946 tcaaatatattggatgtaccatagaatttgc 24230976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 32710120 - 32710150
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  32710120 tcaaatatattggatgtaccatagaatttgc 32710150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 34038540 - 34038570
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  34038540 tcaaatatattggatgtaccatagaatttgc 34038570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 51787844 - 51787874
Alignment:
Q  202 tcaaatatattggatgtaccatagaatttgc 232  Q
    |||||||||||||||||||||||||||||||    
T  51787844 tcaaatatattggatgtaccatagaatttgc 51787874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 45767714 - 45767686
Alignment:
Q  202 tcaaatatattggatgtaccatagaattt 230  Q
    |||||||||||||||||||||||||||||    
T  45767714 tcaaatatattggatgtaccatagaattt 45767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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