View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_low_26 (Length: 208)
Name: NF5175_low_26
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 43168311 - 43168128
Alignment:
| Q |
17 |
agttttaaattatatgtgacttatatttacagcgcatattagaccacttttgaatatataataacatacaaaaattctttcacccatgcaacgcgcgtat |
116 |
Q |
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| T |
43168311 |
agttttaaattatatgtgacttatatttacagcgcatattagatcacttttgaatatataataacgtacaaaaattctttccccaatgcaacgcgcgtat |
43168212 |
T |
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| Q |
117 |
ctcattctagttttaataaaattactacctcgctagagagctttcgccactaattctatcaaaggagacagagtataatctacc |
200 |
Q |
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| T |
43168211 |
ctcattctagttttaataaaattactacctcgctagagagctttcgccactaattctatcaaaggagacagaatataatgtacc |
43168128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 43219865 - 43220045
Alignment:
| Q |
20 |
tttaaattatatgtgacttatatttacagcgcatattagaccacttttgaatatataataacatacaaaaattctttcacccatgcaacgcgcgtatctc |
119 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43219865 |
tttaaattatatgcgacttatatttacagtgcatattagaccgcttttgaatatataataacatacaaaaattctttcacccatgcaacgcgcgaatctc |
43219964 |
T |
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| Q |
120 |
attctagttttaataaaattactacctcgctagagagctttcgccactaattctatcaaaggagacagagtataatctacc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
43219965 |
attctagttttaataaaattactacctcgctatagagctttcaccactaattctatcaaaggagacagaatataatgtacc |
43220045 |
T |
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