View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_low_6 (Length: 326)
Name: NF5175_low_6
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 33750807 - 33750510
Alignment:
| Q |
14 |
aaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33750807 |
aaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatccaatatttgtctcactt |
33750708 |
T |
|
| Q |
114 |
tgaatttcttgattcatattctcgttctcattctcat------cttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaa |
207 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750707 |
tgcatttcttgattcatattctcgttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaa |
33750608 |
T |
|
| Q |
208 |
ccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750607 |
ccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagc |
33750510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 33719153 - 33719037
Alignment:
| Q |
189 |
tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg |
288 |
Q |
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|||||||| || |||||||| | |||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33719153 |
tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg |
33719054 |
T |
|
| Q |
289 |
tggaaaatgttccgagc |
305 |
Q |
| |
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||| ||| ||||||||| |
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| T |
33719053 |
tggtaaaggttccgagc |
33719037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 33735995 - 33735871
Alignment:
| Q |
14 |
aaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactt |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| || | ||||||||||||||||||| | ||||| || ||||||||||| |||||||| || |
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| T |
33735995 |
aaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatt |
33735896 |
T |
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| Q |
114 |
tgaatttcttgattcatattctcgt |
138 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
33735895 |
tgtatttcttgattcatattctcgt |
33735871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 33735824 - 33735714
Alignment:
| Q |
191 |
cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg |
290 |
Q |
| |
|
|||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33735824 |
cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg |
33735725 |
T |
|
| Q |
291 |
gaaaatgttcc |
301 |
Q |
| |
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| ||| ||||| |
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|
| T |
33735724 |
gtaaaggttcc |
33735714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 33721171 - 33721060
Alignment:
| Q |
190 |
gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt |
289 |
Q |
| |
|
||||||| || |||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| |
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|
| T |
33721171 |
gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt |
33721072 |
T |
|
| Q |
290 |
ggaaaatgttcc |
301 |
Q |
| |
|
|| ||| ||||| |
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|
| T |
33721071 |
ggtaaaggttcc |
33721060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 33719321 - 33719203
Alignment:
| Q |
18 |
tccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaa |
117 |
Q |
| |
|
||||||||| |||| | |||||||||||||| ||| |||| |||||| |||||||||||||| |||||||| |||| ||| | |||| ||| |||| | |
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| T |
33719321 |
tccataaacttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgca |
33719222 |
T |
|
| Q |
118 |
tttcttgattcatattctc |
136 |
Q |
| |
|
||||||||||||||||||| |
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| T |
33719221 |
tttcttgattcatattctc |
33719203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 33721327 - 33721214
Alignment:
| Q |
16 |
aatccataaacctcatcagttgttgaaaatcag---tttccccaagcctatcccaaaaatcacaatc---catattattcccaaatcccatatttgtctc |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || | ||||||||||||||||||| ||||||| |
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| T |
33721327 |
aatccataaacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctc |
33721228 |
T |
|
| Q |
110 |
actttgaatttctt |
123 |
Q |
| |
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| |||| ||||||| |
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|
| T |
33721227 |
aatttgcatttctt |
33721214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 32575149 - 32575066
Alignment:
| Q |
14 |
aaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcc |
97 |
Q |
| |
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|||||||||||||||||| | ||| |||| ||| |||||||| | |||||||||| ||||||||||||| ||| | |||||| |
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| T |
32575149 |
aaaatccataaacctcataacttgccgaaattcaccttccccaatcatatcccaaaattcacaatccatatcatttctaaatcc |
32575066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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