View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175_low_9 (Length: 276)
Name: NF5175_low_9
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 32650947 - 32650887
Alignment:
| Q |
159 |
ccactttgatttcctctccacaactccaaccccatatccacacaatcgaagaaggagacag |
219 |
Q |
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| T |
32650947 |
ccactttgatttcctctccacaactccaaccccatatccacacaattgaagaaggagacag |
32650887 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 32651077 - 32651022
Alignment:
| Q |
106 |
cccgttttcgaggcttccttttctcaacaaaagtttactctcttctttgtgtccca |
161 |
Q |
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| T |
32651077 |
cccgttttctaggcttccttttctcaacaaaagtttactctcttctttgtgtccca |
32651022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 32650859 - 32650811
Alignment:
| Q |
220 |
taatcaactctttatttctcaaaccaaaaatctttcattcgttcatctc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32650859 |
taatcaactctttatttctcaaaccaaaaatctttcattcgttcatctc |
32650811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 33854179 - 33854228
Alignment:
| Q |
169 |
ttcctctccacaactccaaccccatatccacacaatcgaagaaggagaca |
218 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
33854179 |
ttcctctccataactccaaacccatatccacacaatcgaagaaggagaca |
33854228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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