View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176-Insertion-11 (Length: 310)

Name: NF5176-Insertion-11
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176-Insertion-11
NF5176-Insertion-11
[»] chr7 (21 HSPs)
chr7 (7-310)||(24391070-24391372)
chr7 (203-310)||(24385052-24385159)
chr7 (16-64)||(19637581-19637629)
chr7 (17-64)||(46769039-46769086)
chr7 (18-64)||(24384861-24384907)
chr7 (15-64)||(22036770-22036819)
chr7 (19-64)||(24383803-24383848)
chr7 (19-71)||(19779275-19779327)
chr7 (16-64)||(22021053-22021101)
chr7 (17-64)||(16846801-16846848)
chr7 (17-64)||(26217632-26217679)
chr7 (17-64)||(26229882-26229929)
chr7 (17-64)||(26237279-26237326)
chr7 (19-65)||(16839717-16839763)
chr7 (19-61)||(20414576-20414618)
chr7 (19-61)||(20456193-20456235)
chr7 (190-247)||(14076542-14076599)
chr7 (190-247)||(14386570-14386627)
chr7 (33-66)||(22039899-22039932)
chr7 (17-61)||(19351400-19351444)
chr7 (19-71)||(19888056-19888108)
[»] chr6 (4 HSPs)
chr6 (112-278)||(24950264-24950427)
chr6 (207-254)||(6921509-6921556)
chr6 (16-64)||(33568660-33568708)
chr6 (207-254)||(6943113-6943160)
[»] chr1 (2 HSPs)
chr1 (3-61)||(39379425-39379482)
chr1 (9-61)||(17561110-17561162)
[»] scaffold0707 (1 HSPs)
scaffold0707 (16-64)||(5054-5102)
[»] scaffold0128 (1 HSPs)
scaffold0128 (16-64)||(8272-8320)
[»] scaffold0097 (2 HSPs)
scaffold0097 (203-254)||(16531-16582)
scaffold0097 (16-64)||(16712-16760)
[»] chr2 (3 HSPs)
chr2 (203-254)||(20712692-20712743)
chr2 (17-64)||(20975226-20975273)
chr2 (16-64)||(20712873-20712921)
[»] chr4 (3 HSPs)
chr4 (16-61)||(1686649-1686694)
chr4 (16-61)||(3557387-3557432)
chr4 (16-61)||(3565405-3565450)
[»] chr5 (1 HSPs)
chr5 (16-64)||(42297811-42297859)
[»] chr3 (1 HSPs)
chr3 (17-61)||(36339792-36339836)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 24391070 - 24391372
Alignment:
Q  7 agatgtgaggagtttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtttttattccctttaaagttggctacaatagttgtcg 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391070 agatgtgag-agtttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtttttattccctttaaagttggctacaatagttgtcg 24391168  T
Q  107 tggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391169 tggtggtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatc 24391268  T
Q  207 atctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttgaatgagccaaccatttgtgtgctcatgg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  24391269 atctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccgtgaagtgttgttgaatgagtcaaccatttgtgtgctcatgg 24391368  T
Q  307 attg 310  Q
    ||||    
T  24391369 attg 24391372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 203 - 310
Target Start/End: Original strand, 24385052 - 24385159
Alignment:
Q  203 gatcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttgaatgagccaaccatttgtgtgctc 302  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||  || |||  |||||||||||||||||||  |||   ||||||||||     
T  24385052 gatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaagtgttgttgaatgaaacaagtctttgtgtgctt 24385151  T
Q  303 atggattg 310  Q
    ||||||||    
T  24385152 atggattg 24385159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 19637629 - 19637581
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  19637629 gagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 19637581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 46769039 - 46769086
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  46769039 agttttgagtgtgggtgataatatttggagaactattcaaagttttcc 46769086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 24384861 - 24384907
Alignment:
Q  18 gtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||||    
T  24384861 gtttttagtttgggagatgatatttggagaagtattcaaagttttcc 24384907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 22036770 - 22036819
Alignment:
Q  15 ggagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22036770 ggagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22036819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 24383803 - 24383848
Alignment:
Q  19 tttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||    
T  24383803 tttttagtttgggtgataatatttggaaaagtattccaagttttcc 24383848  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 19779275 - 19779327
Alignment:
Q  19 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 71  Q
    |||| |||||| ||||||||||||||||| |||||| ||||||||||| ||||    
T  19779275 ttttcagtttgagtgataatatttggagagatattccaagttttcccattgtt 19779327  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 22021053 - 22021101
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    |||| ||||||||||| |||||| |||||||||||||| ||||||||||    
T  22021053 gagtatttagtttgggcgataatgtttggagaaatattgaaagttttcc 22021101  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 16846848 - 16846801
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    |||||||||| |||| ||||||  ||||||||||||||||||||||||    
T  16846848 agtttttagtctgggcgataatgcttggagaaatattcaaagttttcc 16846801  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 26217632 - 26217679
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26217632 agtttttagtttgggtggtaactcttggagaaatattcaaagttttcc 26217679  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 26229882 - 26229929
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26229882 agtttttagtttgggtggtaactgttggagaaatattcaaagttttcc 26229929  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 26237279 - 26237326
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||    
T  26237279 agtttttagtttgggtgttaactgttggagaaatattcaaagttttcc 26237326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 16839763 - 16839717
Alignment:
Q  19 tttttagtttgggtgataatatttggagaaatattcaaagttttccc 65  Q
    |||||||| |||| ||||| | |||||||||||||||||||||||||    
T  16839763 tttttagtctgggcgataacacttggagaaatattcaaagttttccc 16839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 20414576 - 20414618
Alignment:
Q  19 tttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    |||||||||||||||||||| ||||||||| |||| |||||||    
T  20414576 tttttagtttgggtgataatgtttggagaagtattaaaagttt 20414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 20456193 - 20456235
Alignment:
Q  19 tttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  20456193 tttttagtttgggtgataatgtttggagaagtattcaatgttt 20456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 14076542 - 14076599
Alignment:
Q  190 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 247  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14076542 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14076599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 14386570 - 14386627
Alignment:
Q  190 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgtt 247  Q
    ||||||| | || ||| |||||||||||||||||||  |||||||| |||||||||||    
T  14386570 ttgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgtt 14386627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 22039899 - 22039932
Alignment:
Q  33 gataatatttggagaaatattcaaagttttccca 66  Q
    |||||| |||||||||||||||||||||||||||    
T  22039899 gataatgtttggagaaatattcaaagttttccca 22039932  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 19351444 - 19351400
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    ||||||||||||| |||||||| |||||||| |||||| ||||||    
T  19351444 agtttttagtttgagtgataatgtttggagagatattccaagttt 19351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 19888108 - 19888056
Alignment:
Q  19 tttttagtttgggtgataatatttggagaaatattcaaagttttcccaatgtt 71  Q
    ||||||||||| ||||||||||||||||| ||||||  | |||||||| ||||    
T  19888108 tttttagtttgagtgataatatttggagagatattccgaattttcccattgtt 19888056  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 24950427 - 24950264
Alignment:
Q  112 gtgtgtatttgaacggcactcttaattggttggtctttcgaaatgatattatatatgatgattcgaagaataggatgtttgagcattatgcgatcatctc 211  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||   | ||| |||   |   ||||| ||| ||||||||||||    
T  24950427 gtgtgtatttgagcggaactcttaattggttggtcattcgaaatgatattacatatgat---tggaataatcatactgttgagaattttgcgatcatctc 24950331  T
Q  212 acttgatttggggatagagacatacacacaattgttgccccctagagattcccatgaagtgttgttg 278  Q
    |||||||| | ||| ||||||||||| |||||||||||||||| ||| |||  |||||| |||||||    
T  24950330 acttgattcgaggacagagacatacagacaattgttgccccctcgaggttctaatgaagggttgttg 24950264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 6921556 - 6921509
Alignment:
Q  207 atctcacttgatttggggatagagacatacacacaattgttgccccct 254  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  6921556 atctcacttgatttggggacagagacatatacacaattgttgctccct 6921509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 33568660 - 33568708
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  33568660 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 33568708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 6943160 - 6943113
Alignment:
Q  207 atctcacttgatttggggatagagacatacacacaattgttgccccct 254  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  6943160 atctcacttgatttggggacagagacatatacaaaattgttgctccct 6943113  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 39379482 - 39379425
Alignment:
Q  3 caacagatgtgaggagtttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    |||| |||||||| |||||| ||||||||||||||| |||||||||||||| |||||||    
T  39379482 caaccgatgtgag-agttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17561162 - 17561110
Alignment:
Q  9 atgtgaggagtttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    ||||||| | |||| ||||||||||||||  |||||||| |||||||||||||    
T  17561162 atgtgagaatttttaagtttgggtgataacgtttggagagatattcaaagttt 17561110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 5054 - 5102
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  5054 gagttttcagtttgggtgatagttgttggagaaatattcaaagttttcc 5102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 8272 - 8320
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    |||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  8272 gagtctttagtttgggtgataatgtttggagatatattcaaagatttcc 8320  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 16582 - 16531
Alignment:
Q  203 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 254  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  16582 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 16531  T

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Target: scaffold0097; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 16760 - 16712
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  16760 gagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 16712  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 20712743 - 20712692
Alignment:
Q  203 gatcatctcacttgatttggggatagagacatacacacaattgttgccccct 254  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| ||||    
T  20712743 gatcatctccctcgatttggggatggagacatacacacaaatgttgctccct 20712692  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 20975226 - 20975273
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    |||||| | |||||| || |||||||||||||||||||||||||||||    
T  20975226 agttttcactttgggcgaaaatatttggagaaatattcaaagttttcc 20975273  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 20712921 - 20712873
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    ||||||| | |||||| |||||| ||||||||||||||||| |||||||    
T  20712921 gagttttcactttgggcgataatgtttggagaaatattcaatgttttcc 20712873  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 1686694 - 1686649
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    ||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  1686694 gagttttcagtttaggtgataatgtttggagaaatattgaaagttt 1686649  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 3557387 - 3557432
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    ||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3557387 gagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3557432  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 3565405 - 3565450
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    ||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  3565405 gagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3565450  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 42297811 - 42297859
Alignment:
Q  16 gagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 64  Q
    |||| ||||||||||  |||||| ||||||||| |||||||||||||||    
T  42297811 gagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 36339792 - 36339836
Alignment:
Q  17 agtttttagtttgggtgataatatttggagaaatattcaaagttt 61  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||    
T  36339792 agtttttagttttggtgataattgttggagatatattcaaagttt 36339836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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