View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176-Insertion-14 (Length: 295)

Name: NF5176-Insertion-14
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176-Insertion-14
NF5176-Insertion-14
[»] chr5 (1 HSPs)
chr5 (8-295)||(30895048-30895336)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 30895336 - 30895048
Alignment:
Q  8 ctcaagccactctcaacactctatgtagatcaaactgaaatgtttttattatgagtatatgttaaattatttcacacctcaatgcgcgttgtagcgtcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30895336 ctcaagccactctcaacactctatgtagatcaaactgaaatgttcttaacatgagtatatgttaaattatttcacacctcaatgcgcgttgtagcgtcca 30895237  T
Q  108 taatgatcgcaatcacaaggacaaaataaa---atattactttccttggatcttactacaagtttcgttacaaaaataaagttataagactaaaattctc 204  Q
    |||||||||||||||||  || |||| |||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30895236 taatgatcgcaatcaca--gaaaaaaaaaatatatattactttccttggatcttactacaagtttggttacaaaaataaagttataagactaaaattctc 30895139  T
Q  205 actaacgatagcagtcaagactgcaacattactacttcaatgatccacatcttacaaacaacacgagttaaccaccgttcttgcacccaaa 295  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30895138 actaacgattgcagtcaagactgcaacattactacttcaatgatccacatcttacaaacaacacgagttaaccaccgttcttgcacccaaa 30895048  T

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