View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176-Insertion-2 (Length: 1038)
Name: NF5176-Insertion-2
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 782; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 8 - 1019
Target Start/End: Original strand, 36329339 - 36330341
Alignment:
| Q |
8 |
ggcaactctagcactagcagtgaactttgtgtcatacttcattgggattatgcactatgaactagcagatgcagctaacatggtaaccaatttcatggga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36329339 |
ggcaactctagcactagcagtgaactttgtgtcatacttcattgggattatgcattatgaactagcagatgcagctaacatggtaaccaatttcatggga |
36329438 |
T |
|
| Q |
108 |
gttagtaacttgctctccattgtcgtcgccgttcttgctgatacattcattggaagatataaaaccgttcttatttctggcttctttgagtgtttggtaa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36329439 |
gttagtaacttgctctccattgtcgtcgccgttcttgctgattcattcattggaagatataaaaccgttcttatttctggcttctttgagtgtttggtaa |
36329538 |
T |
|
| Q |
208 |
gttttcatactatatacacattttatttttgctaaatatatacacctttcatcggcaacattctatatatctcaaaagtataaataatttggaaacaact |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36329539 |
gttttcatactatatacacattttatttttgctaa-tatatacacctttcatcggcaacattctatatatcccaaaagtataaataatttggaaacaact |
36329637 |
T |
|
| Q |
308 |
ttcagaacataggtttttgctnnnnnnnnnntctttcagagatagatttatgtattattaattaaattattgattggatagatactgtgtggtaggnnnn |
407 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36329638 |
ttcagaacataggtttttgctaaaaaaaaa--ctttcagagatagatttatgtgttattaattaaattattgattggatagataatgtgtggtaggaaaa |
36329735 |
T |
|
| Q |
408 |
nnngttattttgaggggacaagttaatttacatggagatggcgtgtagtagaaaaagggtggcaaatagcaattagtaaccccttataccatatgagaaa |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36329736 |
aaagttattttgaggggacaagttaatttacatggagatggcgtgtagtagaaaaagggtggcaaatagcaattagcaaccccttataccatatgagaaa |
36329835 |
T |
|
| Q |
508 |
cagtataagcccatcacggataacagataataagtccatgagcctaggaaaagcagcatgggcagaccaaaattaagttctaacgaatctaacaagttcc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36329836 |
cagtataagcccatcacggataacagataataagtccatgaccctaggaaaagcagcatgggcagaccaaaattaagttctaacgaatctaacaagttct |
36329935 |
T |
|
| Q |
608 |
atctgattgttgtgagataattcatatttaggaataattacttgtaattcaagtaagtagtgaatcgattcatgaattgatttatattgtgcaaataact |
707 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36329936 |
atctaattgttgtgagataattcatatttaggaataattacttgtaattcaagtaagtagtgaatcgattcatgaattgatttatattgtgcaaataact |
36330035 |
T |
|
| Q |
708 |
gttttagttagttagtgacttgttgaacaagtcagaggagttacttagtttgttgagatcgttagttggnnnnnnnnnnnnnnnnnnaatcggtttgcag |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
36330036 |
gttttagttagttagtgacttgttgaacaagtcagaggagttacttagtttgttgagatcgttagttgg-ttttttcagttttttttaatcggtttgcag |
36330134 |
T |
|
| Q |
808 |
ttttgatttgaattagaattgaatatggaacgctcctgccttacatgagaactttttataccatgttttgctctatttaacacctaaaaatttcaagtaa |
907 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36330135 |
ttttgatttgaattag-attgaatat-gaacgctcctaccttacatgagaac-ttttataccatgttttgctctatttaacacctaaaaatttcaagtaa |
36330231 |
T |
|
| Q |
908 |
tggagtcttattgtggactatgctgcagggactggcgttactcacagtacaagcacattacccttattctgaacccagccatggtgcaacttactgaaca |
1007 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||| ||| |
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|
| T |
36330232 |
tggagtcttattgtgaactatgctgcagggactggcgttactcacagtacaagcacattaccc-taatctgaaaccagccat-atgcaacttacttgaca |
36330329 |
T |
|
| Q |
1008 |
aaaatgcagtgt |
1019 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36330330 |
aaaatgcagtgt |
36330341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 36322541 - 36322744
Alignment:
| Q |
8 |
ggcaactctagcactagcagtgaactttgtgtcatacttcattgggattatgcactatgaactagcagatgcagctaacatggtaaccaatttcatggga |
107 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
36322541 |
ggcaacttttgcactagcagtgaactttgtgtcatacttcgttggtttcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggg |
36322640 |
T |
|
| Q |
108 |
gttagtaacttgctctccattgtcgtcgccgttcttgctgatacattcattggaagatataaaaccgttcttatttctggcttctttgagtgtttggtaa |
207 |
Q |
| |
|
||| || || |||||||||||||||| |||||| |||||||||||| ||||||||| | ||| |||||||||||||||||| |||||||| |||||||| |
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| T |
36322641 |
gtttgttacatgctctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaa |
36322740 |
T |
|
| Q |
208 |
gttt |
211 |
Q |
| |
|
|||| |
|
|
| T |
36322741 |
gttt |
36322744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 916 - 971
Target Start/End: Original strand, 36323394 - 36323449
Alignment:
| Q |
916 |
tattgtggactatgctgcagggactggcgttactcacagtacaagcacattaccct |
971 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36323394 |
tattgtgaattatgttgcagggactggcgttactcacagtacaagcacattaccct |
36323449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 572 - 764
Target Start/End: Complemental strand, 115217 - 115015
Alignment:
| Q |
572 |
gaccaaaattaagttctaacgaatctaacaagttccatctgattgttgtgagataattcatatttaggaataattactt------gtaattcaagtaagt |
665 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||| | | |||||||||||||||| | |||| |||||||||||| ||||| |||||||| |
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|
| T |
115217 |
gaccaaaattaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagc |
115118 |
T |
|
| Q |
666 |
agtgaatcgattcatgaattgatttatattgtgcaaataactgttttagttagt----tagtgacttgttgaacaagtcagaggagttacttagtttgtt |
761 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| || |
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|
| T |
115117 |
agtgaatcgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttatt |
115018 |
T |
|
| Q |
762 |
gag |
764 |
Q |
| |
|
||| |
|
|
| T |
115017 |
gag |
115015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 629 - 775
Target Start/End: Complemental strand, 32986364 - 32986221
Alignment:
| Q |
629 |
tcatatttaggaataattacttgtaattcaagtaagtagtgaatcgattcatgaattgatttatattgtgcaaataactgttttagttagttagtgactt |
728 |
Q |
| |
|
|||| |||| ||||||| ||||||||| ||||||| |||||| |||| ||||| || ||||| || | ||||||||||| ||||||||||||| |
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|
| T |
32986364 |
tcatgtttaagaataatcacttgtaatacaagtaatctgtgaattgattggtgaatcaatctatatagtttacataactgtttt---tagttagtgactt |
32986268 |
T |
|
| Q |
729 |
gttgaacaagtcagaggagttacttagtttgttgagatcgttagttg |
775 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||| |||||||| |
|
|
| T |
32986267 |
gttgaacaagtaagaggtgttagctagtttgttgagatggttagttg |
32986221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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