View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176-Insertion-3 (Length: 1002)

Name: NF5176-Insertion-3
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176-Insertion-3
NF5176-Insertion-3
[»] chr2 (16 HSPs)
chr2 (8-995)||(30946925-30947911)
chr2 (19-277)||(30952866-30953123)
chr2 (404-490)||(17363504-17363590)
chr2 (389-504)||(25867143-25867259)
chr2 (403-562)||(28645682-28645838)
chr2 (403-476)||(31067585-31067658)
chr2 (423-502)||(20378300-20378378)
chr2 (721-790)||(17395837-17395906)
chr2 (418-476)||(21713451-21713509)
chr2 (418-476)||(45550042-45550099)
chr2 (418-475)||(18765677-18765733)
chr2 (525-570)||(20378236-20378281)
chr2 (721-789)||(28645458-28645526)
chr2 (735-789)||(8945023-8945078)
chr2 (433-475)||(24317911-24317953)
chr2 (437-475)||(26860398-26860436)
[»] chr7 (27 HSPs)
chr7 (418-979)||(10259722-10260287)
chr7 (276-828)||(15003071-15003635)
chr7 (641-800)||(30925678-30925837)
chr7 (424-569)||(9732742-9732887)
chr7 (661-818)||(9732498-9732656)
chr7 (414-562)||(9739631-9739779)
chr7 (418-475)||(23174981-23175038)
chr7 (661-799)||(9739392-9739531)
chr7 (424-505)||(21546872-21546953)
chr7 (418-476)||(5299148-5299206)
chr7 (418-475)||(30226086-30226143)
chr7 (676-805)||(2392549-2392677)
chr7 (418-568)||(2392785-2392935)
chr7 (418-475)||(3290785-3290841)
chr7 (414-475)||(13455213-13455273)
chr7 (424-475)||(48797719-48797769)
chr7 (425-475)||(15436057-15436106)
chr7 (735-789)||(21383315-21383369)
chr7 (735-784)||(21546587-21546637)
chr7 (418-475)||(2076507-2076563)
chr7 (418-475)||(2082926-2082982)
chr7 (418-475)||(14984673-14984729)
chr7 (418-475)||(15414284-15414340)
chr7 (418-475)||(15708173-15708229)
chr7 (446-475)||(23057235-23057264)
chr7 (418-475)||(24813926-24813983)
chr7 (418-475)||(26195558-26195614)
[»] chr3 (15 HSPs)
chr3 (423-938)||(8147172-8147693)
chr3 (405-787)||(20975771-20976160)
chr3 (404-817)||(20961815-20962233)
chr3 (423-731)||(15962279-15962588)
chr3 (418-505)||(10082344-10082431)
chr3 (418-505)||(10189269-10189356)
chr3 (664-828)||(23432831-23432998)
chr3 (457-561)||(42245063-42245164)
chr3 (741-790)||(10082100-10082149)
chr3 (741-790)||(10189025-10189074)
chr3 (432-475)||(8224854-8224897)
chr3 (432-475)||(18476945-18476987)
chr3 (445-475)||(15635974-15636004)
chr3 (721-805)||(5535545-5535630)
chr3 (418-475)||(9031482-9031538)
[»] chr1 (16 HSPs)
chr1 (411-787)||(50057515-50057897)
chr1 (411-818)||(951385-951794)
chr1 (405-568)||(19748599-19748761)
chr1 (414-541)||(23600449-23600576)
chr1 (653-814)||(14911619-14911780)
chr1 (418-490)||(49086677-49086749)
chr1 (453-561)||(13799962-13800067)
chr1 (445-569)||(51110383-51110502)
chr1 (735-789)||(18838282-18838337)
chr1 (446-505)||(24549304-24549362)
chr1 (742-799)||(24549568-24549626)
chr1 (423-475)||(45599430-45599481)
chr1 (641-687)||(49086478-49086524)
chr1 (742-799)||(51110640-51110698)
chr1 (403-476)||(4650312-4650384)
chr1 (418-475)||(33062387-33062443)
[»] scaffold0072 (1 HSPs)
scaffold0072 (401-787)||(18534-18926)
[»] scaffold0062 (1 HSPs)
scaffold0062 (401-818)||(1837-2253)
[»] chr6 (20 HSPs)
chr6 (401-799)||(28044705-28045105)
chr6 (418-886)||(32668655-32669124)
chr6 (594-797)||(28043834-28044039)
chr6 (418-818)||(26895601-26896003)
chr6 (423-815)||(13730146-13730540)
chr6 (423-568)||(3357004-3357149)
chr6 (418-561)||(12464168-12464308)
chr6 (659-774)||(10230510-10230625)
chr6 (721-805)||(13553653-13553737)
chr6 (418-557)||(13553352-13553488)
chr6 (432-469)||(28623543-28623580)
chr6 (432-475)||(34657253-34657296)
chr6 (735-817)||(2401582-2401664)
chr6 (748-817)||(22917700-22917770)
chr6 (418-475)||(15038349-15038405)
chr6 (384-476)||(16176560-16176653)
chr6 (418-469)||(20003138-20003188)
chr6 (748-817)||(22884901-22884971)
chr6 (423-469)||(22885243-22885289)
chr6 (418-475)||(16137683-16137739)
[»] chr5 (12 HSPs)
chr5 (467-828)||(17099373-17099748)
chr5 (405-569)||(15116780-15116939)
chr5 (525-717)||(19663715-19663913)
chr5 (418-475)||(17920885-17920941)
chr5 (405-490)||(19663576-19663661)
chr5 (432-469)||(22184705-22184742)
chr5 (418-475)||(11204723-11204779)
chr5 (423-476)||(24394638-24394691)
chr5 (418-475)||(26183336-26183392)
chr5 (441-475)||(22404863-22404897)
chr5 (418-475)||(7898016-7898072)
chr5 (741-817)||(22652074-22652151)
[»] chr4 (19 HSPs)
chr4 (401-828)||(13268830-13269262)
chr4 (414-567)||(13875971-13876119)
chr4 (405-561)||(17871522-17871674)
chr4 (418-567)||(11289347-11289495)
chr4 (458-557)||(15841673-15841772)
chr4 (402-505)||(19564820-19564923)
chr4 (734-816)||(11289113-11289195)
chr4 (735-804)||(17871279-17871349)
chr4 (403-476)||(11865214-11865287)
chr4 (428-505)||(13958997-13959072)
chr4 (414-475)||(24143132-24143192)
chr4 (418-475)||(25354737-25354793)
chr4 (653-704)||(9235089-9235141)
chr4 (432-469)||(10721998-10722035)
chr4 (432-469)||(10935767-10935804)
chr4 (414-475)||(19894905-19894965)
chr4 (418-475)||(21478109-21478165)
chr4 (418-475)||(23541245-23541301)
chr4 (403-476)||(24608692-24608765)
[»] chr8 (13 HSPs)
chr8 (418-567)||(24482319-24482468)
chr8 (418-568)||(32179308-32179458)
chr8 (453-561)||(14162659-14162764)
chr8 (420-475)||(23864568-23864623)
chr8 (432-475)||(37155627-37155669)
chr8 (425-475)||(8726853-8726902)
chr8 (445-475)||(12814693-12814723)
chr8 (441-475)||(24091981-24092015)
chr8 (425-475)||(39080974-39081023)
chr8 (425-490)||(16196138-16196203)
chr8 (656-761)||(16208357-16208460)
chr8 (418-475)||(17279890-17279946)
chr8 (418-475)||(33466261-33466317)
[»] scaffold0495 (1 HSPs)
scaffold0495 (659-774)||(7231-7346)
[»] scaffold0205 (2 HSPs)
scaffold0205 (411-490)||(9966-10045)
scaffold0205 (641-709)||(10222-10290)
[»] scaffold0259 (2 HSPs)
scaffold0259 (665-828)||(20473-20639)
scaffold0259 (411-505)||(20803-20896)
[»] scaffold0032 (1 HSPs)
scaffold0032 (424-475)||(103113-103163)
[»] scaffold0226 (1 HSPs)
scaffold0226 (441-475)||(7641-7675)
[»] scaffold0135 (1 HSPs)
scaffold0135 (653-704)||(40954-41006)
[»] scaffold0143 (1 HSPs)
scaffold0143 (418-475)||(36299-36355)


Alignment Details
Target: chr2 (Bit Score: 869; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 869; E-Value: 0
Query Start/End: Original strand, 8 - 995
Target Start/End: Original strand, 30946925 - 30947911
Alignment:
Q  8 aaaaggacccgaaaagtctatacccaacacatcaaaaagtttcacatcaaggatgccatgttatggaatctcttgtttaattgatagatttccaattcct 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30946925 aaaagaacccgaaaagtctatacccaacacatcaaaaagtttcacatcaaggatgccatgttgtggaatctcttgtttaattgatagatttccaattcct 30947024  T
Q  108 tggcatctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgttctttccacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947025 tggcatctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgttctttccacc 30947124  T
Q  208 ccaaaatgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcacgtaggtataacagatgttaaacacaatgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947125 ccaaaatgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcacgtaggtataacagatgttaaacacaatgtt 30947224  T
Q  308 atgacaaatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatattttaatgagataacaagaagtaaaagacaaggttat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947225 atgacaaatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatattttaatgagataacaagaagtaaaagacaaggttat 30947324  T
Q  408 ttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagc 507  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  30947325 ttgttgacctagtttggtgcaacttcacctacatctaggggctaccaagtcaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagt 30947424  T
Q  508 tttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctctagtgtgagagatccccctccaagttcctcttaatcac 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30947425 tttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaagactctctagtgtgagagatccccctccaagttcctcttaatcac 30947524  T
Q  608 aaaccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttac 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947525 aaaccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttac 30947624  T
Q  708 aactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattg 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947625 aactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattg 30947724  T
Q  808 tggcttcagtgctcaattagggtattttgtcatcctttatatagcctgcttggttgatgggctggatgcacaaatcggggctagaacaatcagctggaat 907  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |  ||| ||| |||||||||||| |||||||||||||||||| ||||    
T  30947725 tggcttcagtgctcaatta-ggtattttgtcatcctttatatagcctgcttgttgaatgagcttgatgcacaaatc-gggctagaacaatcagct-gaat 30947821  T
Q  908 tacgagatttcagcac-agtattctgaagcattatcagatgttttccttaaatggtgca--cacattcttca-gaacacgttaaacataaac 995  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||   ||||||||||  ||||||||||||||||||    
T  30947822 tacgagatttcagcacaagtattctgaagca-tatcagatg-tttccttaaatgttgcaacaacattcttcataaacacgttaaacataaac 30947911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 30952866 - 30953123
Alignment:
Q  19 aaaagtctatacccaacacatcaaaaagtttcacatcaaggatgccatgttatggaatctcttgtttaattgatagatttccaattccttggcatctatt 118  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| ||||||| ||| || |||||||| ||||||| ||||||||||| || |||||||||    
T  30952866 aaaagtctatacccaacacatcaagaagttccacttcaaggataccatgttttggcatttcttgtttgattgatacatttccaattctttagcatctatt 30952965  T
Q  119 gcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgttctttccaccccaaaatgtct 218  Q
    ||||||||||||||||||||||||||||||||||| |||| ||  || |||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  30952966 gcaatttcttaccatagtataaacatccttaaagaaagtt-gaccaacaataacttgtttgaagaacttttgatgttgttctgtccatcccaaaatgtct 30953064  T
Q  219 tccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcac 277  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  30953065 tccataaggcgaagcatgaaaatgttgacatatttgaggaatcttttcatcataggcac 30953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 404 - 490
Target Start/End: Original strand, 17363504 - 17363590
Alignment:
Q  404 ttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 490  Q
    |||||| |||||| |||| |||||||| |||||||||||| |||| ||||||| |||||| ||||||||||||| || |||||||||    
T  17363504 ttatttgttgacccagttcggtgcaacctcacctacatctgggggttaccaagtcaggaatgaaattcactatgatagtatcaattc 17363590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 389 - 504
Target Start/End: Original strand, 25867143 - 25867259
Alignment:
Q  389 aagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaa 487  Q
    |||||||||||| | ||||||| || || |||||||||||||| |||||||||||| | |||||||| |||||||||||||| || |||| || ||| ||    
T  25867143 aagtaaaagacacaagttatttcttaacttagtttggtgcaacgtcacctacatctggaggctaccaggccaggaaggaaatccagtatgatagtattaa 25867242  T
Q  488 ttcgaagcatacataaa 504  Q
    || ||||| | ||||||    
T  25867243 tttgaagcctgcataaa 25867259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 562
Target Start/End: Complemental strand, 28645838 - 28645682
Alignment:
Q  403 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacata 502  Q
    |||||||||| ||| ||||  ||||||| |||||||||||  |||| ||||||| ||||||||||| |||||||  || ||| | || ||||||| ||||    
T  28645838 gttatttattaaccaagttctgtgcaacgtcacctacatccgggggataccaagtcaggaaggaaaatcactataatagtattagtttgaagcatgcata 28645739  T
Q  503 aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaa 562  Q
    ||| | ||   | | ||||||||||| ||  |||||||| ||||||||||||||| ||||    
T  28645738 aaaacatt---cggtctactaacttcgcagctaatcactacccgtgtaatttctatctaa 28645682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 31067658 - 31067585
Alignment:
Q  403 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    ||||||| || ||||||||||||||||| |||||||| ||| |||||||||||  |||||||||||| ||||||    
T  31067658 gttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactat 31067585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 20378378 - 20378300
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacata 502  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||| |||||  ||| ||||||||| |||| ||||||    
T  20378378 ggtgcaacttcacctacatctgggagctaccaagccaggaagaaaatgcacta-agtagtatcaattcaaagcgtacata 20378300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 721 - 790
Target Start/End: Original strand, 17395837 - 17395906
Alignment:
Q  721 agtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa 790  Q
    |||||||||||   || || |||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  17395837 agtccaactctagcattaaggtgatacaagagtggctcacaaacaacaacgacatactaaaaccctaaaa 17395906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 21713509 - 21713451
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    ||||||||||||| |||||||||| |||||||  |||| ||||||||||||| ||||||    
T  21713509 agtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactat 21713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 45550042 - 45550099
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  45550042 agttcggtgcaacatcacctacatctaggggct-ccaagccaggaacgaaatccactat 45550099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 18765677 - 18765733
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  18765677 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 18765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 20378281 - 20378236
Alignment:
Q  525 cttctcacttaatcactgcccgtgtaatttctacctaaaactctct 570  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  20378281 cttctcacttaatcactacccgtgcaatttctacctaagactctct 20378236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 721 - 789
Target Start/End: Complemental strand, 28645526 - 28645458
Alignment:
Q  721 agtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaa 789  Q
    |||||| ||||  |||||| |||||| |||||| ||||||||||||||| ||||| | |||||||||||    
T  28645526 agtccagctctagtatcaaggtgatacaagagttgctcacaaataacaaggacattccaaaaccctaaa 28645458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 789
Target Start/End: Original strand, 8945023 - 8945078
Alignment:
Q  735 atcaaagtgatataagagtggctcacaaataacaa-agacatactaaaaccctaaa 789  Q
    ||||| |||||| ||||||||||||||||||||||  |||||||||||| ||||||    
T  8945023 atcaaggtgatacaagagtggctcacaaataacaacggacatactaaaatcctaaa 8945078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 433 - 475
Target Start/End: Complemental strand, 24317953 - 24317911
Alignment:
Q  433 cacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||||||| |||| |||||||||||||||||||| |||||    
T  24317953 cacctacatctgggggttaccaagccaggaaggaaatccacta 24317911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 26860436 - 26860398
Alignment:
Q  437 tacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  26860436 tacatctgggggctaccaagccaggaaggaaatccacta 26860398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 418 - 979
Target Start/End: Complemental strand, 10260287 - 10259722
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||    
T  10260287 agttcggtgcaacttcaccttcatctgggggctaccaaaccaggaaggaaattcactctagtagtatcaatttgaagcatacataaaagctttcaccagc 10260188  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-------tag-tgtgagagatccccctccaagttcctcttaatcacaa 609  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||       ||| | ||||||||||| |||| | ||||||||||||||||    
T  10260187 ctactaacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcatagatatgagagatccctctcccacttcctcttaatcacaa 10260088  T
Q  610 accagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaa 709  Q
    |||||||| || ||||||| ||||| ||| |||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10260087 accagtgatcgcccttgaaatactaacaa-tatggagacactctccttgacaaagaatcacctcgtgcttacaagcttagagagattcagagttttacaa 10259989  T
Q  710 ctcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtg 809  Q
    ||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |    
T  10259988 ctcaattacaaattccaactataatatcaaagtgatataagagtggctcacaaataacaaaggcagactaaaaccctaaaagactcttttgtaaattgcg 10259889  T
Q  810 gcttcagtgctcaattagggtattttgtcatcctttatatagcctgcttggttgatgggctggatgcacaaatcggggctagaacaatcagctggaatta 909  Q
    |||||||| |||||||  ||| || |||| ||||||||||||| |||||| |  ||||||| ||||||||||||  ||||| ||||||||| | |||| |    
T  10259888 gcttcagtactcaatt-tggtcttctgtcttcctttatatagcatgcttgctgaatgggcttgatgcacaaatc-aggcta-aacaatcag-ttgaatca 10259793  T
Q  910 cgagatttcagcaca-gtattctgaagcattatcagatgttttccttaaatggtgca--cacattcttcagaa 979  Q
     ||||||||| |||| || |||||||||| ||| ||||| |||||||||||| ||||   |||||||||||||    
T  10259792 tgagatttcaacacaggttttctgaagca-tattagatg-tttccttaaatgttgcaacaacattcttcagaa 10259722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 276 - 828
Target Start/End: Complemental strand, 15003635 - 15003071
Alignment:
Q  276 acgtaggtataacagatgttaaacacaatgttatgacaaatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatatttta 375  Q
    ||||||||||| |||||||| ||||| |||||||||||||||| ||||| | |  ||||| ||||||||||||||  |  || ||||||| | |||||||    
T  15003635 acgtaggtatagcagatgttgaacacgatgttatgacaaatcaaatgtcgcgtaagatgtcagaacatcaggacaacaacaacaacaaataactatttta 15003536  T
Q  376 atgagataacaagaagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcact 474  Q
    || | |  ||| ||||||||||||  | || |||||||| || |||| |||||||||| || ||||||| ||| |||| |||||||||| |||||| |||    
T  15003535 attaaaggacatgaagtaaaagactcaagtaatttattgtcccagttcggtgcaactttacgtacatctggggactactaagccaggaatgaaatttact 15003436  T
Q  475 atggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc----- 569  Q
    || ||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||| || |||||||||| ||||||         
T  15003435 atagtagtatcaattcgaagcatacataaaagctatcaccagtctactaatttctcacttaatcactacccgtgcaacttctacctaagactctcactag 15003336  T
Q  570 ---tag-tgtgagagatccccctccaagttcctcttaatcacaaa-ccagtgaccgtccttgaagtactatcaaa-tatggagacattatcctagacaaa 663  Q
       ||| | ||||||||   ||||| | ||||||||| ||||| | ||||||||||| ||| |||||||| |||| |||||||||| | ||||||| ||     
T  15003335 tcctagatatgagagattttcctcccacttcctcttagtcacagatccagtgaccgttcttcaagtactaacaaaatatggagacactctcctagaaaat 15003236  T
Q  664 gaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaa 763  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||| ||| || ||||||||    
T  15003235 gaatcaactcgtgcttaaaagctttgagagattcagagttttactactcaataacaaagtccaactctaatatcaaagtgatatgagaatgactcacaaa 15003136  T
Q  764 taacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattagg 828  Q
    |||||| |||| |||||||||||||||||||  ||| | ||||| |||||||||||| |||||||    
T  15003135 taacaatgacagactaaaaccctaaaagacttctttttcaattgcggcttcagtgcttaattagg 15003071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 641 - 800
Target Start/End: Complemental strand, 30925837 - 30925678
Alignment:
Q  641 atggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaa 740  Q
    ||||||||| | ||| ||| || ||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||||| |||||  ||||||||    
T  30925837 atggagacagtctccgagaaaaggaatcaactcgtgcttaaaagcttagagagattcaaagctttacaactcaattacaaagtcgaactcaaatatcaaa 30925738  T
Q  741 gtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttc 800  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| | |||| |||||    
T  30925737 gtgatataagagtggctcacaaataacaacgacagactaaaaccctatatgacttttttc 30925678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 424 - 569
Target Start/End: Complemental strand, 9732887 - 9732742
Alignment:
Q  424 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctacta 523  Q
    ||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||| | ||||| |||| ||||||| ||||||| || || ||||  |||||    
T  9732887 gtgcaacgtcacctagatctgggggctaccaagccatgaacgaaattcactatagcaatattaatttgaagcatgcataaaaactatctccagtgtacta 9732788  T
Q  524 acttctcacttaatcactgcccgtgtaatttctacctaaaactctc 569  Q
     ||||||||||||||||| | |||| |||||||| |||| ||||||    
T  9732787 gcttctcacttaatcactactcgtgcaatttctatctaagactctc 9732742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 661 - 818
Target Start/End: Complemental strand, 9732656 - 9732498
Alignment:
Q  661 aaagaatcaactcgtgcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctca 759  Q
    |||||||| ||||||||||||||||||| ||| || ||| ||||| ||||||  | || | ||||||||||| ||||||| | ||||  |||||||||||    
T  9732656 aaagaatccactcgtgcttacaagcttacgagcgaatcaaagttt-acaactaaactaaatagtccaactctaatatcaatgagatacgagagtggctca 9732558  T
Q  760 caaataacaaagacatact-aaaaccctaaaagactcttttctaaattgtggcttcagtg 818  Q
    |||||||||| |||| ||| ||||||||||  ||||||||||| ||||| ||||||||||    
T  9732557 caaataacaaggacaaactaaaaaccctaattgactcttttctgaattgcggcttcagtg 9732498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 414 - 562
Target Start/End: Complemental strand, 9739779 - 9739631
Alignment:
Q  414 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 513  Q
    |||||||| |||||||| ||| ||||||||| |||||||||| ||| |||| ||||||| ||| | | ||| |||| ||||||| ||||||| || ||      
T  9739779 acctagttcggtgcaacgtcatctacatctaagggctaccaaaccaagaagaaaattcattatagcagtattaatttgaagcatgcataaaaactatcta 9739680  T
Q  514 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaa 562  Q
    ||  |||||| ||||||||||||||| | |||||| |||||||| ||||    
T  9739679 caatctactagcttctcacttaatcattacccgtgcaatttctatctaa 9739631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 23175038 - 23174981
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  23175038 agttcggtgcaacatcacctacatctaggggctaccaagccaggaaggaaatccacta 23174981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 661 - 799
Target Start/End: Complemental strand, 9739531 - 9739392
Alignment:
Q  661 aaagaatcaactcgtgcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctca 759  Q
    |||||||| ||||||||||||||||||| ||| || ||| ||||| ||||||| | || | |||||| |||| ||||||||| ||||  || ||||||||    
T  9739531 aaagaatccactcgtgcttacaagcttatgagcgaatcaaagttt-acaactcaaataaatagtccagctctaatatcaaagagatacgagtgtggctca 9739433  T
Q  760 caaataacaaagacatact-aaaaccctaaaagactctttt 799  Q
    |||||||||| |||| ||| ||||||||||  |||||||||    
T  9739432 caaataacaaggacagactaaaaaccctaattgactctttt 9739392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 424 - 505
Target Start/End: Complemental strand, 21546953 - 21546872
Alignment:
Q  424 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 505  Q
    |||||||||||||||||||| | ||||||||||  ||| |||||||||||||  ||| ||||||||| ||||| ||||||||    
T  21546953 gtgcaacttcacctacatctggaggctaccaagttagggaggaaattcactaaagtagtatcaattcaaagcaaacataaaa 21546872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 5299148 - 5299206
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    |||||||| |||| || |||| |||||||||||||||||||||||||||||| ||||||    
T  5299148 agtttggtacaacatcgcctagatctaggggctaccaagccaggaaggaaatccactat 5299206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 30226086 - 30226143
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||||||| |||||||||||| |||||||||||| |||||    
T  30226086 agttcggtgcaacgtcacctacatctgggggctaccaagtcaggaaggaaatccacta 30226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 676 - 805
Target Start/End: Complemental strand, 2392677 - 2392549
Alignment:
Q  676 gcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagaca 774  Q
    ||||||||||||| ||| ||||||| |||| ||||||| | || | |||||||||||  |||||| |||||| ||||| |||| | ||||||||| ||||    
T  2392677 gcttacaagcttatgagtgattcagggttt-acaactcaacta-acagtccaactctagtatcaacgtgatagaagagaggctaaaaaataacaaggaca 2392580  T
Q  775 tactaaaaccctaaaagactcttttctaaat 805  Q
      ||||||||||||| ||| ||||| |||||    
T  2392579 agctaaaaccctaaatgacacttttgtaaat 2392549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 418 - 568
Target Start/End: Complemental strand, 2392935 - 2392785
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    |||| |||||||| |||||||| | |  |||||||||||| | ||| ||||||||||||  || ||| | || ||| |||||| |||| || || | ||     
T  2392935 agttcggtgcaacgtcacctacgtttgagggctaccaagctaagaatgaaattcactataatagtattagtttgaaacatacacaaaaactatctcaagt 2392836  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 568  Q
    |||||| |||| ||| |||||||| || |||||||||||| |||| |||||    
T  2392835 ctactagcttcacacctaatcactacctgtgtaatttctatctaacactct 2392785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 3290841 - 3290785
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||||||||| ||||| || ||| ||||||||||||||||||||||||| |||||    
T  3290841 agtttggtgcaacgtcaccaac-tctgggggctaccaagccaggaaggaaatccacta 3290785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 13455273 - 13455213
Alignment:
Q  414 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||| |||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||    
T  13455273 acctagttcggtgcaacgtcacctac-tctgggggctaccaagcaaggaaggaaatccacta 13455213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 475
Target Start/End: Complemental strand, 48797769 - 48797719
Alignment:
Q  424 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  48797769 gtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 48797719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 15436057 - 15436106
Alignment:
Q  425 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||| |||||||| |||||||||||||||||||| |||||||| |||||    
T  15436057 tgcaacgtcacctac-tctaggggctaccaagccagaaaggaaatccacta 15436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 735 - 789
Target Start/End: Complemental strand, 21383369 - 21383315
Alignment:
Q  735 atcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaa 789  Q
    ||||| |||||| |||||||||| ||||| ||||| ||||||| |||||||||||    
T  21383369 atcaaggtgatacaagagtggcttacaaacaacaaggacataccaaaaccctaaa 21383315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 735 - 784
Target Start/End: Complemental strand, 21546637 - 21546587
Alignment:
Q  735 atcaaagtgatataagagtggctcacaaataacaaag-acatactaaaacc 784  Q
    ||||| |||||| |||||||||||||||||||||||| ||| |||||||||    
T  21546637 atcaacgtgatacaagagtggctcacaaataacaaagaacaaactaaaacc 21546587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 2076507 - 2076563
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||    
T  2076507 agttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 2082926 - 2082982
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||    
T  2082926 agttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 14984673 - 14984729
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  14984673 agttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 14984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 15414284 - 15414340
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  15414284 agttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 15414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 15708173 - 15708229
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||||||||| ||||| ||||| ||| ||||||||| ||||||||||| |||||    
T  15708173 agtttggtgcaact-cacctgcatctggggtctaccaagctaggaaggaaatccacta 15708229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 446 - 475
Target Start/End: Original strand, 23057235 - 23057264
Alignment:
Q  446 gggctaccaagccaggaaggaaattcacta 475  Q
    ||||||||||||||||||||||||||||||    
T  23057235 gggctaccaagccaggaaggaaattcacta 23057264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 24813926 - 24813983
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| | ||||||||   ||||||||||||||||||||||||| |||||    
T  24813926 agttcggtgcaacatgacctacataggggggctaccaagccaggaaggaaatccacta 24813983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 26195614 - 26195558
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| ||||||||| ||||||||||| | ||||||||||||| |||| ||||||||||    
T  26195614 agttcggtgcaact-cacctacatctggaggctaccaagccaagaagaaaattcacta 26195558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 423 - 938
Target Start/End: Complemental strand, 8147693 - 8147172
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaag-ctttcaccagcctac 521  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||  || ||||||||||||    
T  8147693 ggtgcaacttcacctttatctaggggctaccaagccaggaaggaaattcactataataatatcaattcgaagcatacaaaaaaaactatcaccagcctac 8147594  T
Q  522 taacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-------tag-tgtgagagatccccctccaagttcctcttaatcacaaacca 613  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||       ||| | |||||||||||||||| | ||||||||||||||||  ||    
T  8147593 taacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcctagatatgagagatccccctcccacttcctcttaatcacaactca 8147494  T
Q  614 gtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcg 713  Q
    |||| |||||||||| ||||| |||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8147493 gtgatcgtccttgaaatactaacaaatatggagacactctcctgaacaaagaatcaactcgttcttacaagcttagagagattcagagttttacaactcg 8147394  T
Q  714 attacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggctt 813  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||| ||||||  |||||    
T  8147393 attacaaagtccaactctaatatcaaagtgatataagagtagctcacaaataataaagacaaactaaaaccttaaaagactcttttgtaaattacggctt 8147294  T
Q  814 cagtgctcaattagggtattttgtcatcctttatatagcctgcttggttgatgggctggatgcacaaatcggggctagaacaatcagctggaattacgag 913  Q
    |||| |||||||| |||  | |||| ||||||||||||| |||||| |  |||||||  ||||||||||| |||||| |||||||||||  ||| | |||    
T  8147293 cagtactcaatta-ggtcatctgtcttcctttatatagcttgcttgctgaatgggcttaatgcacaaatc-gggcta-aacaatcagct-taatcatgag 8147198  T
Q  914 atttcagcaca-gtattctgaagcat 938  Q
    ||||||||||| ||||||||||||||    
T  8147197 atttcagcacatgtattctgaagcat 8147172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 405 - 787
Target Start/End: Complemental strand, 20976160 - 20975771
Alignment:
Q  405 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 504  Q
    ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||   || ||||||||  |||||||||||||    
T  20976160 tatttgttgacatagttcggtgcaacttcacctacatctgggggctaccaaaccaggaaggaaatccactacaatagtatcaatttaaagcatacataaa 20976061  T
Q  505 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc--tagtgtga-----gagatccccctccaagttcc 597  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||| ||||||  ||||   |     |||| ||| |||  | ||||    
T  20976060 agctttcaccaacctactaacttctcacttaatcactacccgtggtatttctacctaagactctcactagtccaaaatatgagaacccactc--acttcc 20975963  T
Q  598 tcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagatt 696  Q
    ||||| ||||| |||| |||||||||||||| | || ||||||||| |||||| | ||||||| |||||||||||| ||||||| ||||||||| |||||    
T  20975962 tcttagtcacagaccaatgaccgtccttgaaatccttatcaaatatagagacactctcctagaaaaagaatcaacttgtgcttaaaagcttagatagatt 20975863  T
Q  697 cagagttttacaactcgattacaaa-gtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaacccta 787  Q
     ||||| ||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  20975862 tagagtattacaactcaattacaaaagtccaactctaatatcaaagagatataagagtggctcacaaataacaacgacaaactaaaacccta 20975771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 404 - 817
Target Start/End: Complemental strand, 20962233 - 20961815
Alignment:
Q  404 ttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataa 503  Q
    |||||| |||||| | | |||||||||||||||||||||| |||| ||||||| |||||||||||  |||||| ||| ||||||||||||||||||||||    
T  20962233 ttatttgttgacccactctggtgcaacttcacctacatctgggggttaccaagtcaggaaggaaagccactatagtagtatcaattcgaagcatacataa 20962134  T
Q  504 aagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctct--agtgtga-----gagatccccctccaagttc 596  Q
    ||| |||||||||||| ||||||||||||||||||||| ||||||  |||||||||||| ||||||   |||   |     |||| ||| |||  | |||    
T  20962133 aagttttcaccagcctgctaacttctcacttaatcactacccgtggtatttctacctaagactctcacaagtcctaaatatgagaacccactc--acttc 20962036  T
Q  597 ctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagat 695  Q
    |||||| ||||| ||||||| ||||||||||| | || || ||||||||||||||| | ||||| ||| ||||||||| |||||| ||||||| ||||||    
T  20962035 ctcttagtcacagaccagtggccgtccttgaaatccttattaaatatggagacattctgctagaaaaataatcaactcatgcttaaaagcttaaagagat 20961936  T
Q  696 tcagagttttacaactcgattac-aaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagact 794  Q
    ||||||| ||||||||| ||||| ||||||||||||| | ||||||| |||||||||||| |||||||||||||| |||| |||||||||||| | | ||    
T  20961935 tcagagtattacaactcaattacaaaagtccaactctaaaatcaaagagatataagagtgtctcacaaataacaacgacagactaaaaccctagatggct 20961836  T
Q  795 cttttctaaattgtggcttcagt 817  Q
    ||||||  ||||| |||||||||    
T  20961835 cttttc--aattgcggcttcagt 20961815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 423 - 731
Target Start/End: Original strand, 15962279 - 15962588
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 522  Q
    |||||||  ||||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||| |  ||    | |||||    
T  15962279 ggtgcaatgtcacctacatctaagg-ctaccaagctaggaaggaaattcactatagtagtatcaatttgaagcatacataaaaaccctcg---gtctact 15962374  T
Q  523 aacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtgaga-----gatccccctccaagttcctcttaatcacaaacc-agt 615  Q
    |   ||||||||||||||| || ||||||||||||||||| |||||| ||||   |||     ||||||   |  | |||||||||||||||| || |||    
T  15962375 ac--tctcacttaatcactacctgtgtaatttctacctaagactctcctagtcctagatatgagatcccttactcacttcctcttaatcacaatcccagt 15962472  T
Q  616 gaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgat 715  Q
    || ||| ||  |||||  | |  | ||||||||| | ||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||| |     
T  15962473 gatcgttctaaaagtaacaactgaaatggagacactctcctaaactaagaatcaacttgtgcttacaagcttcgagagattcagagttttacaactcaac 15962572  T
Q  716 tacaaagtccaactct 731  Q
    ||||||||||||||||    
T  15962573 tacaaagtccaactct 15962588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 418 - 505
Target Start/End: Complemental strand, 10082431 - 10082344
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 505  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||| |||| |||||||||||||||    
T  10082431 agttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaattcactgtgataatattaatttgaagcatacataaaa 10082344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 418 - 505
Target Start/End: Complemental strand, 10189356 - 10189269
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 505  Q
    |||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||    
T  10189356 agttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaagcatacataaaa 10189269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 664 - 828
Target Start/End: Complemental strand, 23432998 - 23432831
Alignment:
Q  664 gaatcaactcgtgcttacaagcttagagagatt-cagagttttacaactcgattacaaagtccaactctgat--atcaaagtgatataagagtggctcac 760  Q
    |||||||||||||||||||||||| ||| |||| |  ||  ||||||||| | ||||||||||| |||  ||  |||||  ||||||||||||| |||||    
T  23432998 gaatcaactcgtgcttacaagctttgagtgatttctaagaattacaactcaactacaaagtccagctca-atgcatcaacatgatataagagtgactcac 23432900  T
Q  761 aaataacaaag-acatactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattagg 828  Q
    || |||||||| ||| |||||||||||||| |||||||||  ||||   ||||||||||  ||||||||    
T  23432899 aattaacaaagaacagactaaaaccctaaatgactcttttacaaatgacggcttcagtgaacaattagg 23432831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 457 - 561
Target Start/End: Original strand, 42245063 - 42245164
Alignment:
Q  457 ccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttc 555  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||     | |||||| ||||||||||||||||| || ||||||||||    
T  42245063 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----ggtctactatcttctcacttaatcactaccagtgtaatttc 42245158  T
Q  556 taccta 561  Q
    ||||||    
T  42245159 taccta 42245164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 741 - 790
Target Start/End: Complemental strand, 10082149 - 10082100
Alignment:
Q  741 gtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa 790  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  10082149 gtgatacaagagtggctcacaaataacaaggacaaactaaaaccctaaaa 10082100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 741 - 790
Target Start/End: Complemental strand, 10189074 - 10189025
Alignment:
Q  741 gtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa 790  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  10189074 gtgatacaagagtggctcacaaataacaaggacaaactaaaaccctaaaa 10189025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 432 - 475
Target Start/End: Original strand, 8224854 - 8224897
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  8224854 tcacctacatctgggggctaccaagccaggaaggaaatccacta 8224897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 475
Target Start/End: Original strand, 18476945 - 18476987
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  18476945 tcacctacatct-ggggctaccaagccaggaaggaaatccacta 18476987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 445 - 475
Target Start/End: Complemental strand, 15636004 - 15635974
Alignment:
Q  445 ggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||||||||||||||||||||||||||    
T  15636004 ggggctaccaagccaggaaggaaattcacta 15635974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 721 - 805
Target Start/End: Original strand, 5535545 - 5535630
Alignment:
Q  721 agtccaactctgatatcaaag-tgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaat 805  Q
    |||||| ||||  |||||||| ||||| |||||| ||||||||| ||||| |||  ||||||||||||| |||| ||||| |||||    
T  5535545 agtccagctctagtatcaaaggtgatacaagagtcgctcacaaacaacaaggacggactaaaaccctaatagacacttttgtaaat 5535630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 9031538 - 9031482
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  9031538 agttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 9031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 2e-89; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 411 - 787
Target Start/End: Original strand, 50057515 - 50057897
Alignment:
Q  411 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagcttt 510  Q
    |||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  50057515 ttgacccagttcagtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccactatagtaatatcaattcgaagcatacataaaagcttt 50057614  T
Q  511 caccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct--ctagt-----gtgagagatccccctccaagttcctcttaa 603  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| |||||  |||||      |  |||| ||| |||  | |||||||||     
T  50057615 caccaacctactaacttctcacttaatcactgtccgtggaatttttacctaagactctcactagtcctaaatatgagaacccactc--acttcctcttag 50057712  T
Q  604 tcacaaaccagtgaccgtccttgaagtac-tatcaaat-atggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagag 701  Q
    ||||| ||||||||||||||||||| | | || ||||| ||||| ||| | | || || ||||| |||||||||||||| ||||||||||||||||||||    
T  50057713 tcacagaccagtgaccgtccttgaaatccttaacaaataatggatacactct-cttgaaaaagattcaactcgtgcttaaaagcttagagagattcagag 50057811  T
Q  702 ttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaacccta 787  Q
      ||| ||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  50057812 cattaaaactcaaatacaaagtccaactctaatatcaaagtgatatgagagtggctcacaaataacaaagacatactaaaatccta 50057897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 411 - 818
Target Start/End: Complemental strand, 951794 - 951385
Alignment:
Q  411 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagcttt 510  Q
    ||||| |||||  |||||||||||||||||| | ||||||||||| |||| ||| |||| |||||| | | ||| |||||||||||||||||||||| ||    
T  951794 ttgacatagttctgtgcaacttcacctacatatgggggctaccaatccagaaagaaaatccactatagcagtataaattcgaagcatacataaaagcctt 951695  T
Q  511 caccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct--------ctag-tgtgagagatccccctccaagttcctctt 601  Q
     |||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||        |||  | ||||||   ||| | ||  ||||||||    
T  951694 gaccagcctactaacttctcacttaatcactacccgtggtatttctacctaagactctaattaatcctaaatatgagag---cccattcac-ttcctctt 951599  T
Q  602 aatcacaaaccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagag 701  Q
    | | | ||||||||||||||   || | |  || |||||||||||||| | |||||||  | |||||  || ||||||| ||||||||||| || |||||    
T  951598 agttaaaaaccagtgaccgt---tgcaatcttaacaaatatggagacactctcctagaacatgaatcttcttgtgcttaaaagcttagagatatacagag 951502  T
Q  702 ttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttct 801  Q
    | ||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||| | |||||||||||    
T  951501 tattacaactcaattacaaagtccaactctaatatcaaagtgatatgagagtgactcacaaataaaaaagacagactaaaaccctagatgactcttttct 951402  T
Q  802 aaattgtggcttcagtg 818  Q
    |||||| ||||||||||    
T  951401 aaattgcggcttcagtg 951385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 405 - 568
Target Start/End: Complemental strand, 19748761 - 19748599
Alignment:
Q  405 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 504  Q
    ||||| ||||||||||| |||||||||||||||| || | | |||||||| || ||||| ||||||||||||  || |||||||||||||||||||||||    
T  19748761 tatttgttgacctagttcggtgcaacttcacctatattt-gcggctaccatgctaggaatgaaattcactataatagtatcaattcgaagcatacataaa 19748663  T
Q  505 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 568  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  19748662 agctttcaccagcctactaacttctcacttaatcactagccgtgcaatttctacctaagactct 19748599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 414 - 541
Target Start/End: Complemental strand, 23600576 - 23600449
Alignment:
Q  414 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 513  Q
    |||||||| ||||||||||||||||||||| | |||||||||| || |||| ||||||||||| ||| |||||||||||||||| |||||||||| || |    
T  23600576 acctagttcggtgcaacttcacctacatctggaggctaccaaggcaagaagaaaattcactatagtagtatcaattcgaagcatgcataaaagctatctc 23600477  T
Q  514 cagcctactaacttctcacttaatcact 541  Q
     || | |||| |||||||||||||||||    
T  23600476 tagtccactagcttctcacttaatcact 23600449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 653 - 814
Target Start/End: Complemental strand, 14911780 - 14911619
Alignment:
Q  653 tcctagacaaagaatcaactcgtgcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgat--atcaaag--tgatat 747  Q
    ||||||||||||||||||||| |||||||||||||  ||| ||||| |||||| ||||||| | ||||  |||||||||| ||  ||||| |  |||||     
T  14911780 tcctagacaaagaatcaactcttgcttacaagcttttgagtgattctgagttt-acaactcaactaca--gtccaactct-atgcatcaacgcgtgatac 14911685  T
Q  748 aagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttc 814  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||| ||||| |||||  |||||||    
T  14911684 aagagtggctcacaaataacaaggacaaactaaaaccct-aaagacacttttgtaaatgatggcttc 14911619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 49086749 - 49086677
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 490  Q
    |||| |||||||| |||||||||| | ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  49086749 agttcggtgcaacgtcacctacatgtgggggctaccaagccaggaaagaaattcactatagtagtatcaattc 49086677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 453 - 561
Target Start/End: Original strand, 13799962 - 13800067
Alignment:
Q  453 caagccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaa 551  Q
    |||| ||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||    || |||||| |||||||||||||||||  | ||||||    
T  13799962 caagtcaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----agtctactatcttctcacttaatcactaacggtgtaa 13800057  T
Q  552 tttctaccta 561  Q
    ||||||||||    
T  13800058 tttctaccta 13800067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 445 - 569
Target Start/End: Original strand, 51110383 - 51110502
Alignment:
Q  445 ggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcc 544  Q
    ||||||||||||||| |||| |||||||||| | || ||||||||  |||||||||||||| |  ||    | |||| ||||||||||||||||||| ||    
T  51110383 ggggctaccaagccaagaagaaaattcactaag-tagtatcaatttaaagcatacataaaaaccctcg---gtctac-aacttctcacttaatcactacc 51110477  T
Q  545 cgtgtaatttctacctaaaactctc 569  Q
     ||| ||||||||||||||||||||    
T  51110478 tgtgcaatttctacctaaaactctc 51110502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 735 - 789
Target Start/End: Complemental strand, 18838337 - 18838282
Alignment:
Q  735 atcaaagtgatataagagtggctcacaaataacaaag-acatactaaaaccctaaa 789  Q
    ||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||    
T  18838337 atcaacgtgatacaagagtggctcacaaataacaaagaacagactaaaaccctaaa 18838282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 446 - 505
Target Start/End: Original strand, 24549304 - 24549362
Alignment:
Q  446 gggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 505  Q
    |||||||||| |||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  24549304 gggctaccaaaccaggaaggaaattcacta-agtagtatcaattcaaagcatacataaaa 24549362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 742 - 799
Target Start/End: Original strand, 24549568 - 24549626
Alignment:
Q  742 tgatataagagtggctcacaaataacaaag-acatactaaaaccctaaaagactctttt 799  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| |||||| |||||||||    
T  24549568 tgatacaagagtgactcacaaataacaaagaacatactaaaatcctaaatgactctttt 24549626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 423 - 475
Target Start/End: Complemental strand, 45599481 - 45599430
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  45599481 ggtgcaacgtcacctac-tctcggggctaccaagccaggaaggaaatccacta 45599430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 641 - 687
Target Start/End: Complemental strand, 49086524 - 49086478
Alignment:
Q  641 atggagacattatcctagacaaagaatcaactcgtgcttacaagctt 687  Q
    ||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  49086524 atggagacactctcctagacaaagaatcaactcttgcttaaaagctt 49086478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 742 - 799
Target Start/End: Original strand, 51110640 - 51110698
Alignment:
Q  742 tgatataagagtggctcacaaataacaaag-acatactaaaaccctaaaagactctttt 799  Q
    ||||| ||||||||||||||| |||||||| ||| ||||||||||||||  ||||||||    
T  51110640 tgatacaagagtggctcacaagtaacaaagaacaaactaaaaccctaaattactctttt 51110698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 4650384 - 4650312
Alignment:
Q  403 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    ||||||| || | ||||||  ||||||| |||||||||| |||||||| ||||| |||||||||||| ||||||    
T  4650384 gttatttgttaatctagttatgtgcaacgtcacctacatttaggggct-ccaagtcaggaaggaaatccactat 4650312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 33062387 - 33062443
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| |||||||||||||||| |||||||| |||||    
T  33062387 agttcggtgcaacgtcacctac-tctgggggctaccaagccagaaaggaaatccacta 33062443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 166; Significance: 3e-88; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 401 - 787
Target Start/End: Original strand, 18534 - 18926
Alignment:
Q  401 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 500  Q
    ||||||||| |||||| |||| ||||||||||||||||| | | ||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||    
T  18534 aggttatttgttgacccagttcggtgcaacttcacctactttt-ggggctaccaagccatgaaggaaatccactatagtagtatcaattcgaagcataca 18632  T
Q  501 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtga-----gagatccccctccaagt 594  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||  |||||| ||||   |     |||| ||| |||  | |    
T  18633 taaaatctttcaccaacctactaacttctcacttaatcactacccgtggtatttctacctacgactctcatagtcctaaatatgagaacccactc--act 18730  T
Q  595 tcctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaa--tcaactcgtgcttacaagcttagag 691  Q
    |||||||||||||| ||||||||||||||||||| | || |  ||||||||||||| | ||||||| ||| ||  |||||||||||||| ||||||||||    
T  18731 tcctcttaatcacataccagtgaccgtccttgaaatccttagtaaatatggagacactctcctagaaaaaaaaaatcaactcgtgcttaaaagcttagag 18830  T
Q  692 agattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaacccta 787  Q
    ||||||||||  ||||||||| |||||||||||||||||| ||||||||||||||| |   |||||||||||||||||||||| ||||||||||||    
T  18831 agattcagagcattacaactcaattacaaagtccaactctaatatcaaagtgatatgatcatggctcacaaataacaaagacaaactaaaacccta 18926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 165; Significance: 1e-87; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 401 - 818
Target Start/End: Complemental strand, 2253 - 1837
Alignment:
Q  401 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 500  Q
    ||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||| || |||  || |||||||||||||||||||    
T  2253 aggttatttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagccaggaaagaaatccattatactagtatcaattcgaagcataca 2154  T
Q  501 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct-ctagtgtgagagatccccctcca---agttc 596  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||| ||||| ||| |   | | ||     ||||   | |||    
T  2153 taaaagctttcaccagcctactaacttctcacttaatcactacctgtggtatttctacctaagactctcctaatcctaaatatgagaatccaatcacttc 2054  T
Q  597 ctcttaatcacaaaccagtgaccgtccttgaagtac-tatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagat 695  Q
    |||||| | ||| ||||||||||||||||||| | | || |||||||||||||| | ||||||| ||||||||||||||||| || ||||||||||||||    
T  2053 ctcttagttacagaccagtgaccgtccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaactcgtgcctaaaagcttagagagat 1954  T
Q  696 tcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactc 795  Q
    ||||||  ||||||||| |||||||||||||||     ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||| | |||||    
T  1953 tcagagcattacaactcaattacaaagtccaac-----tattaaagtgatatgagagtggctcacaaataacaaagacagactaaaactctagatgactc 1859  T
Q  796 ttttctaaattgtggcttcagtg 818  Q
    ||||   ||||||||||||||||    
T  1858 tttt-acaattgtggcttcagtg 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 1e-71; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 401 - 799
Target Start/End: Complemental strand, 28045105 - 28044705
Alignment:
Q  401 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 500  Q
    |||||||||  ||||| |||| ||||||| ||||||||||| | |||||||||||| ||| || ||||| |||||| ||| ||||||||||||||||| |    
T  28045105 aggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatata 28045006  T
Q  501 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctctagtgtga-----gagatccccctccaagtt 595  Q
    ||||||  ||||| |||  |||||||||||||||||||||| ||||||  |||||||||||| |||| |||||   |     |||| ||| |||  | ||    
T  28045005 taaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc-ctagtcctaaatatgagaacccactc--actt 28044909  T
Q  596 cctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagaga 694  Q
    ||||||| ||||| |||||||||  |||||||| | || | |||||||||||||| | ||||||| |||||||||||||||||||| |||||||||| ||    
T  28044908 cctcttagtcacagaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaactcgtgcttaaaagcttagag-ga 28044810  T
Q  695 ttcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagact 794  Q
    |||| ||| ||||||||| |||||||||||||||||| |||||||||  |||| |||||| | ||||||||||||||||| ||| |||||||| | ||||    
T  28044809 ttcaaagtattacaactcaattacaaagtccaactctaatatcaaagaaatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgact 28044710  T
Q  795 ctttt 799  Q
    |||||    
T  28044709 ctttt 28044705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 418 - 886
Target Start/End: Original strand, 32668655 - 32669124
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    |||| |||||||  |||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||||||||||| |||||||||| |   || | |     
T  32668655 agttcggtgcaaagtcacctacatct-ggggctaccaaac-aggaaggaaatttactatggtagtatcaattcgaagaatacataaaaac---catcggt 32668749  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtgaga-----gatccccctccaagttcctcttaatcacaaac 611  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||   |||     ||| |||  |  | |||||||||||||||| |    
T  32668750 ctactagcttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcatagaaatgagattccctactcacttcctcttaatcacaatc 32668849  T
Q  612 c-agtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaac 710  Q
    | ||||| ||||||| ||||| || |||| ||| |||||   ||||| |  ||||||| ||||||||||||| | || ||||||||||||||||||||||    
T  32668850 ccagtgatcgtccttaaagtaataacaaaaatgaagacacactcctaaaataagaatcgactcgtgcttacatgatttgagagattcagagttttacaac 32668949  T
Q  711 tcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatact-aaaaccctaaaagactcttttctaaattgtg 809  Q
    || | |||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||  |||||| || |||| ||      
T  32668950 tcaactacaaagtccaactcaaatatcaaagtgatatgagagtggctcacaaataac-aagacagactaaaaaccctaattgactctcttgtaaaatgca 32669048  T
Q  810 gcttcagtgctcaattagggtattttgtcatcctttatatagcctgcttggttgatgggctggatgcacaaatcggg 886  Q
    ||||| |||   ||||| ||| ||  ||| ||||||||||||||||  ||  | ||||| | |||||||||||||||    
T  32669049 gcttccgtgacaaatta-ggtcttaagtcttcctttatatagcctgaatgcataatgggattgatgcacaaatcggg 32669124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 594 - 797
Target Start/End: Complemental strand, 28044039 - 28043834
Alignment:
Q  594 ttcctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaa-tcaactcgtgcttacaagcttagag 691  Q
    ||||||||| ||||| ||||||||||||||||||| |  | | |||||||||||||| |    |||| ||| || |||||||||||||| ||||||| ||    
T  28044039 ttcctcttagtcacagaccagtgaccgtccttgaaatctttaacaaatatggagacactcaattagaaaaaaaaatcaactcgtgcttaaaagcttatag 28043940  T
Q  692 agattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaag 791  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||| | ||| |||||||| | |    
T  28043939 agattcagagtattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtggcacacaaataacaaagatagactgaaaccctagatg 28043840  T
Q  792 actctt 797  Q
    ||||||    
T  28043839 actctt 28043834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 418 - 818
Target Start/End: Original strand, 26895601 - 26896003
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| || ||| ||||||||| |||||||||||| | |   |  | |     
T  26895601 agtttggtgcaacttcacctacatct-ggggttaccaagccagaaaggaaattcacaatagtagtatcaattcaaagcatacataataac---cctcggt 26895696  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct-ctagtgtgagagatc----cccct-ccaagttcctcttaatcacaa-a 610  Q
    |||||| ||||||||||||||||| | |||| ||||||||||||| ||||| |||||   ||| |||    ||||| | || ||||| ||||||| ||      
T  26895697 ctactatcttctcacttaatcactactcgtgaaatttctacctaagactctcctagtcctagatatcaaatcccctactaacttccttttaatcaaaatc 26895796  T
Q  611 ccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaac 710  Q
    ||||||| ||||||  |||||  | ||   ||  ||||| | |||||  |  ||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  26895797 ccagtgatcgtcctaaaagtaacaacattaattaagacactctcctaagctgagaatcaactcgtgcttacaagctttgagtgattcaaagttttacaac 26895896  T
Q  711 tcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtgg 810  Q
    || | |||||||| |||||   ||||| |||  |||  |||||||||||||||||||||||||| |||||||||||||  ||||||||| | ||||| ||    
T  26895897 tcaactacaaagttcaacttcaatatc-aagaaatacgagagtggctcacaaataacaaagacaaactaaaaccctaattgactcttttgtgaattgcgg 26895995  T
Q  811 cttcagtg 818  Q
    ||| ||||    
T  26895996 ctttagtg 26896003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 423 - 815
Target Start/End: Complemental strand, 13730540 - 13730146
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 522  Q
    |||| |||||||| ||  ||| |||||||||| || |||||||||||||||||| ||  |||||| ||||||||||||||||| |   | |||| ||| |    
T  13730540 ggtgaaacttcacttatgtctgggggctaccatgctaggaaggaaattcactatagtggtatcaactcgaagcatacataaaaac---cgccagtctaat 13730444  T
Q  523 aacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtgaga-----gatccccctccaagttcctcttaatcacaaacc-agt 615  Q
    |  |||||||||||||| | ||||| ||||||||||||||  | ||| ||||   |||     |||||||  |  | || ||||||||||||| || | |    
T  13730443 agattctcacttaatcattacccgtctaatttctacctaaggcactcctagtcctagatatgagatcccctactcactttctcttaatcacaatcccaat 13730344  T
Q  616 gaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgat 715  Q
    || ||||||  |||||  | || | ||||||||| | ||||| || |||||| ||||| ||||||||||||| |||||||| |||| ||||||||||       
T  13730343 gatcgtcctaaaagtaacaacagaaatggagacactctcctaaactaagaattaactcttgcttacaagctttgagagatttagagatttacaactcagc 13730244  T
Q  716 tacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttca 815  Q
    ||||||||| |||||| ||||||| | ||||| |||| |||||||||  |||||||||| ||||||| | |||  || |||||| |||||||||||||||    
T  13730243 tacaaagtcaaactctaatatcaaggagatatgagaggggctcacaa--aacaaagacagactaaaagcttaattgattcttttgtaaattgtggcttca 13730146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 423 - 568
Target Start/End: Complemental strand, 3357149 - 3357004
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 522  Q
    |||||||  ||||||| |||||||||||||||||||| ||||||||||||||||  || ||| | || ||||| ||||||||| || || |||| |||||    
T  3357149 ggtgcaatgtcacctatatctaggggctaccaagccaagaaggaaattcactataatagtattagtttgaagcgtacataaaaactatctccagtctact 3357050  T
Q  523 aacttctcacttaatcactgcccgtgtaatttctacctaaaactct 568  Q
    | |||| ||| |||||||| ||||||||||||||| |||| |||||    
T  3357049 agcttcgcacctaatcactacccgtgtaatttctatctaagactct 3357004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 418 - 561
Target Start/End: Original strand, 12464168 - 12464308
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacat-aaaagctttcaccag 516  Q
    |||| ||||||||||||||||||| | || |||||| || ||||||||||||||||||  ||| ||||||||| || ||||||| |||| ||||     |    
T  12464168 agttcggtgcaacttcacctacatgtgggagctaccgagtcaggaaggaaattcactaaagtagtatcaattcaaaacatacataaaaatcttt----gg 12464263  T
Q  517 cctactaacttctcacttaatcactgcccgtgtaatttctaccta 561  Q
     |||||| ||||||||||||||||| |||||| ||||||||||||    
T  12464264 tctactagcttctcacttaatcactacccgtgcaatttctaccta 12464308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 659 - 774
Target Start/End: Original strand, 10230510 - 10230625
Alignment:
Q  659 acaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctc 758  Q
    ||||||||||||||||||| |||||  || ||| |||||||||||||||||||| | || | ||| ||||||  ||||||||| ||||  || |||||||    
T  10230510 acaaagaatcaactcgtgcctacaaattttgagtgattcagagttttacaactcaactatatagttcaactcaaatatcaaagcgatacgagggtggctc 10230609  T
Q  759 acaaataacaaagaca 774  Q
    |||||| |||||||||    
T  10230610 acaaattacaaagaca 10230625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 721 - 805
Target Start/End: Original strand, 13553653 - 13553737
Alignment:
Q  721 agtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaat 805  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||||||  |||| | |||||||||||| ||| ||||| |||||    
T  13553653 agtccaactctaatatcaacgtgatacaagagtggctcacaaataacagggacaaagtaaaaccctaaatgacacttttgtaaat 13553737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 557
Target Start/End: Original strand, 13553352 - 13553488
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    |||| |||||||| |||||||| | | |||||||||| |||||||||||||||||||||  || ||| | || ||||||||||||||| |   || | |     
T  13553352 agttgggtgcaacatcacctacgtttgggggctaccatgccaggaaggaaattcactataatagtattattttgaagcatacataaaaac---catcggt 13553448  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttcta 557  Q
    |||||||||||  || |||||||| || ||||||||||||    
T  13553449 ctactaacttcgtacctaatcactacctgtgtaatttcta 13553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 28623543 - 28623580
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaat 469  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28623543 tcacctacatctaggggctaccaagccaggaaggaaat 28623580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 432 - 475
Target Start/End: Complemental strand, 34657296 - 34657253
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  34657296 tcacctacatctaggggctaccaagccaagaaggaaatccacta 34657253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 735 - 817
Target Start/End: Original strand, 2401582 - 2401664
Alignment:
Q  735 atcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagt 817  Q
    ||||| |||||| || |||| || ||||||||||| |||| ||||||| |||||| |||||| |||| ||||| |||||||||    
T  2401582 atcaaggtgatacaaaagtgtctaacaaataacaaggacagactaaaatcctaaatgactctattctcaattgcggcttcagt 2401664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 748 - 817
Target Start/End: Complemental strand, 22917770 - 22917700
Alignment:
Q  748 aagagtggctcacaaataacaaag-acatactaaaaccctaaaagactcttttctaaattgtggcttcagt 817  Q
    |||||||||||||||||||||||| ||| |||||||| ||| | ||| ||||||| ||||| |||||||||    
T  22917770 aagagtggctcacaaataacaaagtacaaactaaaactctagatgacacttttctcaattgcggcttcagt 22917700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 15038349 - 15038405
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  15038349 agtttggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 15038405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 476
Target Start/End: Original strand, 16176560 - 16176653
Alignment:
Q  384 acaagaagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    ||||||||||||||||| | | | ||| || ||| ||||| |||| ||||||||||| |||   ||||||||||||||||||||| ||||||||    
T  16176560 acaagaagtaaaagacacaaggtgtttgttaacccagtttagtgcgacttcacctacgtctgcaggctaccaagccaggaaggaatttcactat 16176653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 20003138 - 20003188
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaat 469  Q
    |||| |||||||| |||||||| | |||||||||||||||||||||||||||    
T  20003138 agttcggtgcaacgtcacctactt-taggggctaccaagccaggaaggaaat 20003188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 748 - 817
Target Start/End: Complemental strand, 22884971 - 22884901
Alignment:
Q  748 aagagtggctcacaaataacaaag-acatactaaaaccctaaaagactcttttctaaattgtggcttcagt 817  Q
    |||||||||||||||||||||||| ||| |||||||| ||| | ||| ||||||| ||||| | |||||||    
T  22884971 aagagtggctcacaaataacaaagtacaaactaaaactctagatgacacttttctcaattgcgacttcagt 22884901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 423 - 469
Target Start/End: Complemental strand, 22885289 - 22885243
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaat 469  Q
    |||||||| |||||||||||| |||||  ||||||||||||||||||    
T  22885289 ggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaat 22885243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 16137739 - 16137683
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||| |||||| |||||||| |||  |||||||||||||||||||||||| |||||    
T  16137739 agtttgatgcaacgtcacctac-tctgagggctaccaagccaggaaggaaatccacta 16137683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 2e-70; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 467 - 828
Target Start/End: Complemental strand, 17099748 - 17099373
Alignment:
Q  467 aattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaact 566  Q
    |||||||| | ||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||  |||||| ||||||||||||| |||    
T  17099748 aattcactgtagtagtatcaattcgaagtatacataaaagctatcaccagcctacgaacttctcacttaatcaccacccgtgcaatttctacctaagact 17099649  T
Q  567 ctc--------tag-tgtgagagatccccctccaagttcctcttaatcacaaa-ccagtgaccgtccttgaagta-ct--atcaaa--tatggagacatt 651  Q
    |||        ||| | |||||||||||| |||   ||||||||| ||||| | ||||||||||||||| ||||| ||  | ||||  |||||||||| |    
T  17099648 ctcactagttctagatatgagagatccccatcccgcttcctcttagtcacagatccagtgaccgtccttaaagtaacttgaacaaaaatatggagacact 17099549  T
Q  652 atcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataaga 751  Q
     |||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||| || ||||||||||||||| ||||||| |||| ||||||    
T  17099548 ctcctagacaatgaatcaactcgtgcttaaaagctttgacagattcagagttttacaactcaataacaaagtccaactctaatatcaaggtgacataaga 17099449  T
Q  752 gtggctcacaaataacaaagacatactaaaaccctaaaagac-tcttttctaaattgtggcttcagtgctcaattagg 828  Q
    || ||||||||||||||| || | |||||| |||||||| || |||||||  ||||| ||||||||||||||||||||    
T  17099448 gttgctcacaaataacaacgatagactaaagccctaaaaaacttcttttc--aattgcggcttcagtgctcaattagg 17099373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 405 - 569
Target Start/End: Original strand, 15116780 - 15116939
Alignment:
Q  405 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 504  Q
    ||||| |||||| ||||  ||||||| |||||||| ||| |||||||||||| ||||||||||||||||||  ||| ||||||||| || ||||||||||    
T  15116780 tatttgttgacccagttcagtgcaacctcacctacgtctgggggctaccaagtcaggaaggaaattcacta-agtattatcaattcaaatcatacataaa 15116878  T
Q  505 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 569  Q
    | |   |  | | |||| ||||||||||||||||||  |||||| ||||||||||||| ||||||    
T  15116879 aac---cctcggtctac-aacttctcacttaatcaccacccgtgcaatttctacctaagactctc 15116939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 525 - 717
Target Start/End: Original strand, 19663715 - 19663913
Alignment:
Q  525 cttctcacttaatcactgcccgtgtaatttctacctaaaactct--------ctag-tgtgagagatccccctccaagttcctcttaatcaca-aaccag 614  Q
    ||||||||||||||||| |||||||||||||||||||| |||||        |||| | |||||||||||||||| | ||||||||| ||| | | ||||    
T  19663715 cttctcacttaatcactacccgtgtaatttctacctaagactctcactattcctagatatgagagatccccctcccacttcctcttagtcatagatccag 19663814  T
Q  615 tgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcga 714  Q
    ||||||||||| |   | || || | ||||||||| | ||| ||| ||||||| ||||| |||||||||||||  || ||||||||| |||||||||| |    
T  19663815 tgaccgtccttaa---aataacataaatggagacactctccaagaaaaagaattaactcttgcttacaagctttaagtgattcagag-tttacaactcaa 19663910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 17920941 - 17920885
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  17920941 agttcggtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaatccacta 17920885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 405 - 490
Target Start/End: Original strand, 19663576 - 19663661
Alignment:
Q  405 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 490  Q
    ||||| |||||| |||| |||||||| |||||||||| |  ||||||| |||||| ||| ||||||||||||| || |||||||||    
T  19663576 tatttgttgacccagttcggtgcaacctcacctacatatgcgggctacaaagccatgaatgaaattcactatgatagtatcaattc 19663661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 22184742 - 22184705
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaat 469  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22184742 tcacctacatctaggggctaccaagccaggaaggaaat 22184705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 11204723 - 11204779
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  11204723 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 11204779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 24394638 - 24394691
Alignment:
Q  423 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    |||||||| |||||||||||| |||||  |||||||||||||||||| ||||||    
T  24394638 ggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatccactat 24394691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 26183392 - 26183336
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  26183392 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatacacta 26183336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 441 - 475
Target Start/End: Complemental strand, 22404897 - 22404863
Alignment:
Q  441 tctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||||||||||||||||||||||||| |||||    
T  22404897 tctaggggctaccaagccaggaaggaaatccacta 22404863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 7898072 - 7898016
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  7898072 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 7898016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 741 - 817
Target Start/End: Complemental strand, 22652151 - 22652074
Alignment:
Q  741 gtgatataagagtggctcacaaataa-caaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagt 817  Q
    |||||| |||||||||||||||| || ||| ||| || |||||||||||| |||| | |||| ||||| |||||||||    
T  22652151 gtgatacaagagtggctcacaaaaaagcaaggacgtaataaaaccctaaatgactttattctcaattgcggcttcagt 22652074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 8e-67; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 401 - 828
Target Start/End: Original strand, 13268830 - 13269262
Alignment:
Q  401 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 500  Q
    ||||| ||| || ||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||  ||| |||||||| ||||||||||    
T  13268830 aggttgtttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccactacagtagtatcaatttgaagcataca 13268929  T
Q  501 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct--ctagtgtga-----gagatccccctccaag 593  Q
    ||||||| ||||||  ||||||||||||||||||||||| | ||||||  ||||||| |||| | |||  |||||   |     |||| ||| |||  |     
T  13268930 taaaagccttcaccgacctactaacttctcacttaatcattacccgtggtatttctaactaagaatctaactagtcctaaatatgagaacccactc--ac 13269027  T
Q  594 ttcctcttaatcacaaaccagtgaccgtccttgaagtactat--caaat-atggagacattatcctagacaaagaatcaactcgtgcttacaagcttaga 690  Q
    ||||| ||| ||||| ||  |||||||| ||| || |  | |  ||||| ||||||||| | ||||||| ||||||||| |||||||||| |||||||||    
T  13269028 ttcctattagtcacagacgcgtgaccgttcttaaaatcttttagcaaatgatggagacactctcctagaaaaagaatca-ctcgtgcttaaaagcttaga 13269126  T
Q  691 gagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa 790  Q
    |||||||||||| ||||||||| ||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||| |||| |||||||||| | |     
T  13269127 gagattcagagtattacaactcaattacaaagtcgaactcaaatatcaaagtgatataagagtggcttacaaataacaatgacagactaaaaccccagat 13269226  T
Q  791 gactcttttctaaattgtggcttcagtgctcaattagg 828  Q
    ||||||||||  ||||| |||||||||| | |||||||    
T  13269227 gactcttttc--aattgcggcttcagtgatgaattagg 13269262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 414 - 567
Target Start/End: Original strand, 13875971 - 13876119
Alignment:
Q  414 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 513  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||| | ||       
T  13875971 acctagtttggtgcaacttaacctacatat-ggggctaccaagccaggaaggaaattcactatagtagtatcaattcaaagaatacataaaaccatt--- 13876066  T
Q  514 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 567  Q
      | |||||| ||||||||||||||||| |   || ||||||||||||| ||||    
T  13876067 -ggtctactagcttctcacttaatcactacttatgcaatttctacctaagactc 13876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 405 - 561
Target Start/End: Complemental strand, 17871674 - 17871522
Alignment:
Q  405 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 504  Q
    ||||| |||||| |||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||  ||| ||||||||| ||| |||||||||    
T  17871674 tatttcttgacccagttcggtgcaacttcacctacatctgagggctaccaagtcaggaaggaaattcacta-agtagtatcaattcaaagtatacataaa 17871576  T
Q  505 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctaccta 561  Q
    |    ||  | | |||||| |||||||| |||||||| || ||| ||||||||||||    
T  17871575 a---atcctcggtctactagcttctcacctaatcactacctgtgcaatttctaccta 17871522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 418 - 567
Target Start/End: Complemental strand, 11289495 - 11289347
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    |||| |||||||| ||||| || ||| |||| || |||||||||||| ||||||||||  | | ||| |||| |||||  |||||||| || |  | ||     
T  11289495 agttcggtgcaacgtcaccaacgtct-ggggttaacaagccaggaagaaaattcactagagcagtattaatttgaagctaacataaaaactatgtctagt 11289397  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 567  Q
    |||||| ||||||||||||||||| ||| ||||||||||| |||| ||||    
T  11289396 ctactagcttctcacttaatcactacccatgtaatttctatctaagactc 11289347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 458 - 557
Target Start/End: Original strand, 15841673 - 15841772
Alignment:
Q  458 caggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttcta 557  Q
    |||||||||||||||||||  |||||| | || ||||||||||||||| || || | || |||||| |||| ||| |||||||| |||||  ||||||||    
T  15841673 caggaaggaaattcactataataatattagtttgaagcatacataaaaactatctctagtctactagcttcgcacctaatcactacccgttcaatttcta 15841772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 19564820 - 19564923
Alignment:
Q  402 ggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacat 501  Q
    |||||||| || ||| ||||||||||||| ||| |||  ||||| || |||||||||| ||||||||| ||||||  || ||||| || ||||||| |||    
T  19564820 ggttatttgttaacccagtttggtgcaacgtcatctaagtctagaggttaccaagccaagaaggaaatccactataatagtatcagtttgaagcatgcat 19564919  T
Q  502 aaaa 505  Q
    ||||    
T  19564920 aaaa 19564923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 734 - 816
Target Start/End: Complemental strand, 11289195 - 11289113
Alignment:
Q  734 tatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcag 816  Q
    |||||| |||||  ||||| |||||||||||||||| || | |||||||||||||||||| ||||| | ||||| ||| ||||    
T  11289195 tatcaacgtgatgcaagagcggctcacaaataacaaggatagactaaaaccctaaaagacacttttgtgaattgcggcatcag 11289113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 735 - 804
Target Start/End: Complemental strand, 17871349 - 17871279
Alignment:
Q  735 atcaaagtgatataagagtggctcacaaataacaaag-acatactaaaaccctaaaagactcttttctaaa 804  Q
    ||||| |||||| ||||||| |||||||||||||||| |||||||||||||||| | ||| ||||| ||||    
T  17871349 atcaacgtgatacaagagtgactcacaaataacaaagaacatactaaaaccctacatgacacttttgtaaa 17871279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 11865287 - 11865214
Alignment:
Q  403 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    ||||||| || ||| |||| |||||||| ||  |||| ||| |||||||||||||||||||| |||||||||||    
T  11865287 gttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaagccaggaagaaaattcactat 11865214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 505
Target Start/End: Original strand, 13958997 - 13959072
Alignment:
Q  428 aacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 505  Q
    ||||||||||||  |||||| |||||||||||||||||||||||| ||  ||| |||||| || ||||||||||||||    
T  13958997 aacttcacctacgactaggg-ctaccaagccaggaaggaaattcatta-agtagtatcaaatcaaagcatacataaaa 13959072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 24143132 - 24143192
Alignment:
Q  414 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||| |||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  24143132 acctagttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 24143192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 25354793 - 25354737
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  25354793 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 25354737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 653 - 704
Target Start/End: Original strand, 9235089 - 9235141
Alignment:
Q  653 tcctagacaaagaatcaactcgtgcttacaagct-tagagagattcagagttt 704  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  9235089 tcctagacaaagaatcaactcttgcttacaagctattgagtgattcagagttt 9235141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 10721998 - 10722035
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaat 469  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  10721998 tcacctacatctaggggttaccaatccaggaaggaaat 10722035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 10935767 - 10935804
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaat 469  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  10935767 tcacctacatctaggggttaccaatccaggaaggaaat 10935804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 19894965 - 19894905
Alignment:
Q  414 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||| |||||||| |||| ||| |||||| |||||||||||||||| ||||| |||||    
T  19894965 acctagttcggtgcaacgtcacatac-tctaggagctaccaagccaggaacgaaatccacta 19894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 21478109 - 21478165
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  21478109 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatacacta 21478165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 23541245 - 23541301
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  23541245 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 23541301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 24608692 - 24608765
Alignment:
Q  403 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 476  Q
    ||||||| || ||| |||| |||||||| |||||||| ||| ||| |||||||||  | |||||||||||||||    
T  24608692 gttatttgttaacccagttcggtgcaacgtcacctacgtctggggactaccaagcttgaaaggaaattcactat 24608765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 418 - 567
Target Start/End: Original strand, 24482319 - 24482468
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    ||||||||||||| |||||||||||| ||||||| |||| || |||||||||||||||| ||| |||||||||| ||||||||||||| ||||| ||||     
T  24482319 agtttggtgcaacgtcacctacatctgggggctaacaagtcaagaaggaaattcactatagtagtatcaattcgcagcatacataaaaactttctccagt 24482418  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 567  Q
    |||||| ||||||||||||||||| | |||| |||||||| |||| ||||    
T  24482419 ctactagcttctcacttaatcactactcgtgcaatttctatctaagactc 24482468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 418 - 568
Target Start/End: Original strand, 32179308 - 32179458
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 517  Q
    |||| ||||||||||||||||| ||| | |||||| |||  |||||| ||||||||||| | | ||| |||| ||||||||||||||| || ||  |||     
T  32179308 agttcggtgcaacttcacctacgtctggaggctacaaagttaggaagaaaattcactatagcagtattaatttgaagcatacataaaaactatcttcagt 32179407  T
Q  518 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 568  Q
    |||| | ||||||||||||||||  |||||| |||||||| |||| |||||    
T  32179408 ctaccagcttctcacttaatcaccacccgtgcaatttctatctaagactct 32179458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 453 - 561
Target Start/End: Original strand, 14162659 - 14162764
Alignment:
Q  453 caagccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaa 551  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||    || |||||| ||||||||||||||||| || ||||||    
T  14162659 caagccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----agtctactatcttctcacttaatcactaccggtgtaa 14162754  T
Q  552 tttctaccta 561  Q
    ||||||||||    
T  14162755 tttctaccta 14162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 475
Target Start/End: Complemental strand, 23864623 - 23864568
Alignment:
Q  420 tttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||||||| |||||||||||| |||| ||||||| ||||||| |||| |||||    
T  23864623 tttggtgcaacatcacctacatctgggggataccaagtcaggaagaaaatccacta 23864568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 475
Target Start/End: Complemental strand, 37155669 - 37155627
Alignment:
Q  432 tcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  37155669 tcacctac-tctgggggctaccaagccaggaaggaaattcacta 37155627  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 8726853 - 8726902
Alignment:
Q  425 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  8726853 tgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 8726902  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 445 - 475
Target Start/End: Complemental strand, 12814723 - 12814693
Alignment:
Q  445 ggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||||||||||||||||||||||||||    
T  12814723 ggggctaccaagccaggaaggaaattcacta 12814693  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 441 - 475
Target Start/End: Original strand, 24091981 - 24092015
Alignment:
Q  441 tctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||||||||||||||||||||||||| |||||    
T  24091981 tctaggggctaccaagccaggaaggaaatccacta 24092015  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 39080974 - 39081023
Alignment:
Q  425 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  39080974 tgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 39081023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 16196203 - 16196138
Alignment:
Q  425 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 490  Q
    |||||| | |||||||||| ||||| |||||| || ||| ||||||||||||| || |||||||||    
T  16196203 tgcaacctaacctacatctgggggccaccaaggcatgaatgaaattcactatgatagtatcaattc 16196138  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 656 - 761
Target Start/End: Complemental strand, 16208460 - 16208357
Alignment:
Q  656 tagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgat--atcaaagtgatataagagt 753  Q
    |||| ||||||||||||| |||||||||||||  || ||||||||  |||||||||| |||||  ||||||||||| ||  ||||| |||||| |||||     
T  16208460 tagaaaaagaatcaactcatgcttacaagctttaagtgattcaga-atttacaactcaattac--agtccaactct-atgcatcaacgtgatacaagagc 16208365  T
Q  754 ggctcaca 761  Q
    ||||||||    
T  16208364 ggctcaca 16208357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 17279890 - 17279946
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| |||| |||||||||||||||||||| |||||    
T  17279890 agttcggtgcaacgtcacctac-tctgggggataccaagccaggaaggaaatccacta 17279946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 33466317 - 33466261
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||| |||| |||||    
T  33466317 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaagaaaatccacta 33466261  T

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Target: scaffold0495 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 659 - 774
Target Start/End: Original strand, 7231 - 7346
Alignment:
Q  659 acaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctc 758  Q
    ||||||||||||||||||| |||||  || ||| |||||||||||||||||||| | || | ||| ||||||  ||||||||| ||||  || |||||||    
T  7231 acaaagaatcaactcgtgcctacaaattttgagtgattcagagttttacaactcaactatatagttcaactcaaatatcaaagcgatacgagggtggctc 7330  T
Q  759 acaaataacaaagaca 774  Q
    |||||| |||||||||    
T  7331 acaaattacaaagaca 7346  T

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Target: scaffold0205 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 411 - 490
Target Start/End: Original strand, 9966 - 10045
Alignment:
Q  411 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 490  Q
    |||||| |||| |||||||| | |||||||||| |||||||| |||||||||||||||||||||||  || |||||||||    
T  9966 ttgacccagttcggtgcaacctaacctacatctgggggctacaaagccaggaaggaaattcactataatagtatcaattc 10045  T

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Target: scaffold0205; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 641 - 709
Target Start/End: Original strand, 10222 - 10290
Alignment:
Q  641 atggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaa 709  Q
    ||||||||| | ||||||| ||| ||||||||| ||||||||||||| ||| |||| ||||||||||||    
T  10222 atggagacactctcctagaaaaaaaatcaactcttgcttacaagctttgagtgatttagagttttacaa 10290  T

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Target: scaffold0259 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 665 - 828
Target Start/End: Complemental strand, 20639 - 20473
Alignment:
Q  665 aatcaactcgtgcttacaagcttagagagattcaga-gttttacaactcgattacaaagtccaactctgat--atcaaagtgatataagagtggctcaca 761  Q
    ||||||||||||||||||||||| ||| ||||  || |  ||||||||| | ||||||||||| |||  ||  ||||| |||||| ||||||||||||||    
T  20639 aatcaactcgtgcttacaagctttgagtgatttcgaagaattacaactcaactacaaagtccagctca-atgcatcaacgtgatacaagagtggctcaca 20541  T
Q  762 aataacaaag-acatactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattagg 828  Q
    |||||||||| ||  |||||||||||||  |||| |||| |||||  ||| |||| || |||||||||    
T  20540 aataacaaagaaccgactaaaaccctaagtgactattttgtaaatgatgggttcaatgatcaattagg 20473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 20896 - 20803
Alignment:
Q  411 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 505  Q
    ||||||||||| ||||||||||||||||  | | || | ||||||| |||||||||||||||| |  ||| ||||||||| ||||| ||||||||    
T  20896 ttgacctagttcggtgcaacttcacctatgtgtgggagttaccaagtcaggaaggaaattcacca-agtagtatcaattcaaagcaaacataaaa 20803  T

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Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 424 - 475
Target Start/End: Original strand, 103113 - 103163
Alignment:
Q  424 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  103113 gtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaatccacta 103163  T

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Target: scaffold0226 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 441 - 475
Target Start/End: Complemental strand, 7675 - 7641
Alignment:
Q  441 tctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||||||||||||||||||||||||||||||||||    
T  7675 tctaggggctaccaagccaggaaggaaattcacta 7641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 653 - 704
Target Start/End: Original strand, 40954 - 41006
Alignment:
Q  653 tcctagacaaagaatcaactcgtgcttacaagct-tagagagattcagagttt 704  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  40954 tcctagacaaagaatcaactcttgcttacaagctattgagtgattcagagttt 41006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 36299 - 36355
Alignment:
Q  418 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 475  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||| |||| |||||    
T  36299 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaagaaaatccacta 36355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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