View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176-Insertion-5 (Length: 800)

Name: NF5176-Insertion-5
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176-Insertion-5
NF5176-Insertion-5
[»] chr3 (23 HSPs)
chr3 (8-800)||(9637428-9638218)
chr3 (453-743)||(6808907-6809193)
chr3 (453-743)||(25486797-25487083)
chr3 (453-745)||(17385343-17385619)
chr3 (458-608)||(19633327-19633478)
chr3 (457-692)||(2547874-2548109)
chr3 (459-505)||(11401077-11401123)
chr3 (458-504)||(54040205-54040251)
chr3 (458-504)||(54049492-54049538)
chr3 (458-507)||(17391837-17391886)
chr3 (464-553)||(19978340-19978429)
chr3 (459-507)||(25105579-25105627)
chr3 (459-530)||(21094220-21094291)
chr3 (460-543)||(27050238-27050320)
chr3 (463-505)||(13438556-13438598)
chr3 (459-504)||(15551125-15551170)
chr3 (470-507)||(21765305-21765342)
chr3 (459-507)||(21764242-21764290)
chr3 (461-504)||(31413908-31413951)
chr3 (459-496)||(8603172-8603209)
chr3 (453-530)||(8853522-8853598)
chr3 (459-504)||(17760064-17760109)
chr3 (459-504)||(19061384-19061429)
[»] chr2 (17 HSPs)
chr2 (8-179)||(35946853-35947023)
chr2 (168-344)||(35946513-35946679)
chr2 (464-683)||(22576541-22576756)
chr2 (101-252)||(35984557-35984704)
chr2 (535-615)||(18994838-18994918)
chr2 (656-724)||(18331767-18331833)
chr2 (458-504)||(7513680-7513726)
chr2 (453-596)||(23157904-23158048)
chr2 (453-596)||(23569161-23569305)
chr2 (458-504)||(42180027-42180073)
chr2 (459-504)||(22331164-22331209)
chr2 (459-504)||(45619698-45619743)
chr2 (34-110)||(35933109-35933184)
chr2 (459-573)||(23154388-23154503)
chr2 (459-573)||(23565645-23565760)
chr2 (360-390)||(35946480-35946510)
chr2 (453-502)||(24533277-24533326)
[»] chr7 (21 HSPs)
chr7 (461-746)||(13487797-13488076)
chr7 (456-543)||(26427114-26427201)
chr7 (462-613)||(17150954-17151105)
chr7 (457-543)||(6461374-6461460)
chr7 (453-506)||(6210570-6210623)
chr7 (459-530)||(9128899-9128969)
chr7 (635-684)||(26427295-26427343)
chr7 (663-728)||(17999128-17999191)
chr7 (458-504)||(14252961-14253007)
chr7 (459-505)||(39293367-39293413)
chr7 (459-504)||(14278125-14278170)
chr7 (459-504)||(45148081-45148126)
chr7 (459-503)||(12246472-12246516)
chr7 (459-506)||(16065055-16065102)
chr7 (461-513)||(16093314-16093368)
chr7 (459-505)||(14974186-14974232)
chr7 (459-505)||(15403662-15403708)
chr7 (459-505)||(44306897-44306943)
chr7 (461-502)||(16436407-16436448)
chr7 (635-696)||(17910648-17910708)
chr7 (459-504)||(19066112-19066157)
[»] chr8 (15 HSPs)
chr8 (453-683)||(25261846-25262074)
chr8 (461-683)||(24623310-24623529)
chr8 (459-506)||(31195902-31195949)
chr8 (656-728)||(28932860-28932930)
chr8 (458-504)||(16041164-16041210)
chr8 (458-504)||(16042840-16042886)
chr8 (458-504)||(18610757-18610803)
chr8 (459-504)||(17500516-17500561)
chr8 (459-504)||(25608640-25608685)
chr8 (453-505)||(18032848-18032900)
chr8 (462-504)||(17265409-17265451)
chr8 (459-505)||(20177658-20177704)
chr8 (459-505)||(20222385-20222431)
chr8 (662-728)||(15062648-15062712)
chr8 (464-505)||(23543820-23543861)
[»] scaffold0024 (1 HSPs)
scaffold0024 (461-615)||(100996-101151)
[»] chr5 (9 HSPs)
chr5 (473-683)||(19266891-19267104)
chr5 (453-543)||(37275790-37275880)
chr5 (461-505)||(19318121-19318165)
chr5 (453-543)||(37278061-37278151)
chr5 (453-505)||(25340922-25340974)
chr5 (458-505)||(34937948-34937995)
chr5 (459-504)||(11765051-11765096)
chr5 (459-504)||(14343506-14343551)
chr5 (460-497)||(16837014-16837051)
[»] scaffold0123 (2 HSPs)
scaffold0123 (457-615)||(33934-34095)
scaffold0123 (457-553)||(33826-33925)
[»] chr6 (17 HSPs)
chr6 (457-615)||(23295736-23295897)
chr6 (459-722)||(15482287-15482547)
chr6 (459-508)||(12466174-12466223)
chr6 (535-615)||(10973380-10973460)
chr6 (453-513)||(24217345-24217405)
chr6 (458-505)||(35010940-35010987)
chr6 (458-504)||(19627827-19627873)
chr6 (464-505)||(19728998-19729039)
chr6 (459-504)||(22595121-22595166)
chr6 (543-615)||(12975113-12975185)
chr6 (459-503)||(16374879-16374923)
chr6 (460-504)||(31162516-31162560)
chr6 (458-504)||(17084980-17085026)
chr6 (626-724)||(23845612-23845709)
chr6 (459-496)||(11374489-11374526)
chr6 (459-504)||(17858009-17858054)
chr6 (459-496)||(29162148-29162185)
[»] scaffold1869 (1 HSPs)
scaffold1869 (464-683)||(798-1015)
[»] chr4 (11 HSPs)
chr4 (459-530)||(13908673-13908744)
chr4 (453-543)||(10115963-10116053)
chr4 (453-513)||(20847392-20847452)
chr4 (459-573)||(13933302-13933416)
chr4 (656-728)||(11923499-11923570)
chr4 (458-504)||(19699231-19699277)
chr4 (458-504)||(19709816-19709862)
chr4 (459-504)||(40902363-40902408)
chr4 (459-502)||(41918415-41918458)
chr4 (453-503)||(14616503-14616553)
chr4 (656-696)||(16028745-16028786)
[»] scaffold0161 (1 HSPs)
scaffold0161 (457-587)||(3734-3867)
[»] scaffold0186 (1 HSPs)
scaffold0186 (453-506)||(11525-11578)
[»] scaffold0317 (1 HSPs)
scaffold0317 (459-507)||(15506-15554)
[»] scaffold0205 (1 HSPs)
scaffold0205 (453-530)||(4113-4190)
[»] scaffold0111 (1 HSPs)
scaffold0111 (459-543)||(28868-28953)
[»] scaffold0126 (1 HSPs)
scaffold0126 (637-696)||(34346-34404)
[»] scaffold0191 (1 HSPs)
scaffold0191 (458-504)||(313-359)
[»] scaffold0138 (3 HSPs)
scaffold0138 (458-504)||(26803-26849)
scaffold0138 (458-504)||(27818-27864)
scaffold0138 (458-504)||(39814-39860)
[»] scaffold0009 (1 HSPs)
scaffold0009 (459-505)||(256038-256084)
[»] chr1 (4 HSPs)
chr1 (458-504)||(20252695-20252741)
chr1 (459-504)||(33395838-33395883)
chr1 (459-547)||(11845112-11845199)
chr1 (461-504)||(21199238-21199281)
[»] scaffold0396 (1 HSPs)
scaffold0396 (459-504)||(164-209)
[»] scaffold0115 (1 HSPs)
scaffold0115 (459-504)||(20217-20262)
[»] scaffold0508 (1 HSPs)
scaffold0508 (461-505)||(5850-5894)
[»] scaffold0231 (1 HSPs)
scaffold0231 (459-506)||(14584-14631)
[»] scaffold0090 (1 HSPs)
scaffold0090 (459-505)||(36418-36464)
[»] scaffold0017 (1 HSPs)
scaffold0017 (459-505)||(11125-11171)
[»] scaffold0005 (1 HSPs)
scaffold0005 (453-503)||(200824-200874)
[»] scaffold0086 (1 HSPs)
scaffold0086 (460-505)||(11060-11105)
[»] scaffold0040 (1 HSPs)
scaffold0040 (573-683)||(48701-48808)
[»] scaffold0003 (1 HSPs)
scaffold0003 (461-502)||(26037-26078)
[»] scaffold0002 (1 HSPs)
scaffold0002 (562-615)||(95158-95211)


Alignment Details
Target: chr3 (Bit Score: 736; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 8 - 800
Target Start/End: Complemental strand, 9638218 - 9637428
Alignment:
Q  8 gttttacatataaaatgatcaaatatttgtttgtttgttacatgcaattgtaaggacacataatatggctgaaattctaaaaattctttatgttttcatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638218 gttttacatataaaatgatcaaatatttgtttgtttgttacatgcaatt-taaggacacataatatggctgaaattctaaaaattctttatgttttcatc 9638120  T
Q  108 atcttcctatcactaattctggctgtaattagccaacatcgtaagtccattttcacatccatttaaatgtttcttatttatcatatataaaatctttcac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638119 atcttcctatcactaattctggctgtaattagccaacatcgtaagtccattttcacatccatttaaatgtttcttatttatcatatataaaatctttcac 9638020  T
Q  208 acccccttcttgtaacattcatttgtattcttatttgaaatacagctttcaccccctgcgaaaccaatgcggattgcaaatgtcgtaatcataaaagacc 307  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638019 acccccttcttgtaacattcatttatattcttatttgaaatacagctttcaccccctgcgaaaccaatgcggattgcaaatgtcgtaatcataaaagacc 9637920  T
Q  308 agattgtctttggcataaatgttattgctattaagtgtaacaattaagtgaaaaataattctatgttacttttaataagctacctattgatttgcatgta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9637919 agattgtctttggcataaatgttattgctattaagtgtaacaattaagtgaaaaataattctatgttacttttaataagctacctattgatttgcatgta 9637820  T
Q  408 atattttagactctttggcataaatgttattcctattaagtgtaacaattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaat 507  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9637819 atgttttagactctttggcataaatgttattcctattaagtgtaacaattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaat 9637720  T
Q  508 tggattttgaaaataattttaccaaattgaatccaccaacataattaaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9637719 tggattttgaaaataattttaccaaattgaatccaccaacataattaaaacaaccaattacgttctgtagaagctatgtaataaacatctccaattacat 9637620  T
Q  608 ttttcaaaataccaccttaacatgacttgaatgcatagacttgaagtaaaagactcgacaatgcacaaatcaccaaactatattatacattaacttacac 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  9637619 ttttcaaaataccaccttaacatgacttgaatgcatagacttgaagt-aaagattcgacaatgcacaactcaccaaactatattatacattaacttacac 9637521  T
Q  708 atcatataatatcttcaccaattaacattataatcaccataaatatgnnnnnnnaccaactttttgcattatcaagtatttacatccttacaa 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  9637520 atcatataatatcttcaccaattaacattataatcaccataaatatgtttttttaccaactttttgcattatcaagtatttacatccttacaa 9637428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 453 - 743
Target Start/End: Original strand, 6808907 - 6809193
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggatt-ttgaaaataattttaccaaattgaatccaccaacataa 551  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||||||| |||||||||| |||| || |||||||||  ||| |||||||||||||||    
T  6808907 caattatcaagtgcatgcaatgttctagactcttctagatgcatgtggtatcaattggattcttgagaa-aattttaccgtattaaatccaccaacataa 6809005  T
Q  552 ttaaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttg 650  Q
    | || |  ||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |   || |||||| ||||||||| || ||     
T  6809006 taaacatcacccattatgttctgcagaagctatgtaataaacatcaccaattacattcttcaaaacacctc--gaatatgactatgaatgcatggaattc 6809103  T
Q  651 aagtaaaagactcgacaatgcacaaatcaccaaactatattatacattaacttacacatcatataatatcttcaccaa-ttaacattataatca 743  Q
    | || |||||||||||||||||||| || ||||||||||||||||   || | ||| ||||||||||||||||||||| ||||||| |||||||    
T  6809104 acgt-aaagactcgacaatgcacaactcgccaaactatattatac---aattcacagatcatataatatcttcaccaatttaacataataatca 6809193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 453 - 743
Target Start/End: Complemental strand, 25487083 - 25486797
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataat 552  Q
    |||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||||| |  | |||||||| ||  ||||||||||||||| ||||    
T  25487083 caattatcaagtgcatgtaatgttctagactattctaaatgcatgtggtaccaattggattatagagataattttgccgtattgaatccaccaacgtaat 25486984  T
Q  553 taaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttga 651  Q
     || |  ||||||||||||||||||||||||||||||||||||  ||||||||||| |||  || | ||||| ||||||| | ||||||||| ||||| |    
T  25486983 aaacatcaccaattacgttctgcagaagctatgtaataaacattaccaattacattcttc--aagaacacctcaacatgattatgaatgcatggacttca 25486886  T
Q  652 agtaaaagactcgacaatgcacaaatcaccaaactatattatacattaacttacacatcatataatatcttcaccaa-ttaacattataatca 743  Q
      | |||||||||||||| |||   |||||||||||||||||||   ||  | |||||||||||||||||||||||| ||||||| |||||||    
T  25486885 cat-aaagactcgacaatacacggctcaccaaactatattatac---aatctgcacatcatataatatcttcaccaatttaacataataatca 25486797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 453 - 745
Target Start/End: Original strand, 17385343 - 17385619
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataat 552  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| || | ||||| |||||  ||||||||||| ||| ||||    
T  17385343 caattatcaaatgcatgcaatgttctagactcttctagatgcatgtggtactaattggattatggagataatcttaccgcattgaatccactaacgtaat 17385442  T
Q  553 taaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttga 651  Q
     || || ||||||         ||||| | |||||| ||||| |  |||||||||| |||||||   ||||| ||||||||| ||||||||| ||||| |    
T  17385443 aaacaccaccaat---------cagaaacaatgtaacaaacaccatcaattacattcttcaaaa---cacctcaacatgactatgaatgcatggacttaa 17385530  T
Q  652 agtaaaagactcgacaatgcacaaatcaccaaactatattatacattaacttacacatcatataatatcttcaccaattaacattataatcacc 745  Q
    |||||| ||||||||||||||||| |||||||||||||||||||   || ||||||||||||| |||||||||| ||||||||| |||| ||||    
T  17385531 agtaaa-gactcgacaatgcacaagtcaccaaactatattatac---aatttacacatcatat-atatcttcacaaattaacataataagcacc 17385619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 458 - 608
Target Start/End: Complemental strand, 19633478 - 19633327
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaa-attgaatccaccaacataattaaa 556  Q
    |||| ||||||| |||||||||||||| ||||| |||| || | |||| | |||||  | | |||||||||||   | |||||||||||||||||| ||     
T  19633478 atcatatgcatgcaatgttctagactcatctagatgcacgtcgcaccattaggattccggagataattttaccgttaatgaatccaccaacataataaat 19633379  T
Q  557 acaaccaattacgttctgcagaagctatgtaataaacatctccaattacatt 608  Q
    |  ||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  19633378 atcaccaattatattctgcagaagctatgtaataaacatcaccaattacatt 19633327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 457 - 692
Target Start/End: Complemental strand, 2548109 - 2547874
Alignment:
Q  457 tatcaaatgcatgtaatgttctagactcttct--agctgcatgtggtaccaattggattttgaaaataattttaccaa-attgaatccaccaacataatt 553  Q
    ||||||||| ||| ||||||||| ||||||||  || |||||||||||||| | |||||  ||| |||||||||||   | ||||| ||||||||||||     
T  2548109 tatcaaatgtatgcaatgttctatactcttctctagatgcatgtggtaccattaggattccgaagataattttaccgttaatgaatacaccaacataata 2548010  T
Q  554 aaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttgaa 652  Q
    || |  |||||||| ||| ||||||| |||||||||||||||| |||||||  || |||||   | ||||| || |||| | |||||||||  |||| ||    
T  2548009 aacatcaccaattatgttttgcagaaactatgtaataaacatcaccaattatgttcttcaa---atcacctcaatatgattatgaatgcatgaacttcaa 2547913  T
Q  653 gtaaaagactcgacaatgcacaaatcaccaaactatatta 692  Q
    || || |||| ||||||| |||| ||||||||||||||||    
T  2547912 gt-aaggacttgacaatgaacaactcaccaaactatatta 2547874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 505
Target Start/End: Original strand, 11401077 - 11401123
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  11401077 tcaaatgcatgcaatgttctagactcttctagatgcatgtggtacca 11401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 54040251 - 54040205
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||    
T  54040251 atcaaatgcatgcaatgttctagactcttctagatgcatgtggtacc 54040205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 54049538 - 54049492
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||    
T  54049538 atcaaatgcatgcaatgttctagactcttctagatgcatgtggtacc 54049492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 17391837 - 17391886
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaat 507  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  17391837 atcaaatgcatgcaatgttcaagactcttctagatgcatgtggtaccaat 17391886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 464 - 553
Target Start/End: Complemental strand, 19978429 - 19978340
Alignment:
Q  464 tgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataatt 553  Q
    |||||| ||| ||||||||||| |||| ||||||||||||||| ||||||  | | |||||||||||  ||||||||||| ||| |||||    
T  19978429 tgcatgcaatattctagactctcctagatgcatgtggtaccaaatggattgcggagataattttaccgtattgaatccactaacgtaatt 19978340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 507
Target Start/End: Complemental strand, 25105627 - 25105579
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaat 507  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  25105627 tcaaatgcatgcaatgttctagactcctctaggtgcatgtggtaccaat 25105579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 459 - 530
Target Start/End: Complemental strand, 21094291 - 21094220
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttacc 530  Q
    |||| |||||| |||||||||||| ||||||  ||||||||||||||||||||||  | | |||||||||||    
T  21094291 tcaagtgcatgcaatgttctagacacttctacatgcatgtggtaccaattggattccggagataattttacc 21094220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 27050238 - 27050320
Alignment:
Q  460 caaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccac 543  Q
    |||||||||| ||||||||| ||| |||||| ||||||| |||||| |||||||  ||||||||| |||||  |||||||||||    
T  27050238 caaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggattccgaaaataatcttaccgtattgaatccac 27050320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 505
Target Start/End: Original strand, 13438556 - 13438598
Alignment:
Q  463 atgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  13438556 atgcatgcaatgttctagactcttctagatgcatgtggtacca 13438598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 15551170 - 15551125
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  15551170 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 15551125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 507
Target Start/End: Original strand, 21765305 - 21765342
Alignment:
Q  470 taatgttctagactcttctagctgcatgtggtaccaat 507  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21765305 taatgttctagactcttctagatgcatgtggtaccaat 21765342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 507
Target Start/End: Complemental strand, 21764290 - 21764242
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaat 507  Q
    ||||||||||| ||||||||||||| |||||| |||||||| |||||||    
T  21764290 tcaaatgcatgaaatgttctagactattctagatgcatgtgataccaat 21764242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 504
Target Start/End: Complemental strand, 31413951 - 31413908
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||    
T  31413951 aaatgcatgcaatgttctagactcttctagatgcatgcggtacc 31413908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 8603172 - 8603209
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcat 496  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  8603172 tcaaatgcatgcaatgttctagactcttctagatgcat 8603209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 530
Target Start/End: Complemental strand, 8853598 - 8853522
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttacc 530  Q
    ||||||| ||||||||| |||||||||||||| ||||| || ||||| |||| || ||||| || | |||||||||||    
T  8853598 caattattaaatgcatgcaatgttctagactcatctagatgtatgtgatacc-ataggattctggagataattttacc 8853522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 17760109 - 17760064
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||    
T  17760109 tcaaatgcatgcaatgttctagactcttcttgatgcatgcggtacc 17760064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 19061429 - 19061384
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||    
T  19061429 tcaaatgcatgcaatgttctagactcttcttgatgcatgcggtacc 19061384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 8e-54; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 35947023 - 35946853
Alignment:
Q  8 gttttacatataaaatgatcaaatatttgtttgtttgttacatgcaattgtaaggacacataatatggctgaaattctaaaaattctttatgttttcatc 107  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  35947023 gttttacatataaaacgatcaaatatttatttgtttgttacatgcaaat-taaggacaaataatatggctgaaattctaaaaattgtttattttttcatc 35946925  T
Q  108 atcttcctatcactaattctggctgtaattagccaacatcgtaagtccattttcacatccatttaaatgttt 179  Q
    ||||| ||||| || ||||||| ||||| ||||||| || ||||||||||||||||| ||||||||||||||    
T  35946924 atcttactatcccttattctggttgtaactagccaatatagtaagtccattttcacacccatttaaatgttt 35946853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 168 - 344
Target Start/End: Complemental strand, 35946679 - 35946513
Alignment:
Q  168 atttaaatgtttcttatttatcatatataaaatctttcacacccccttcttgtaacattcatttgtattcttatttgaaatacagctttcaccccctgcg 267  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||  |||||||||||||||||||| ||      ||||||    
T  35946679 atttaaatgtttcttatttatcatatataaaatcttt--caccctcttctcgtaacattcatt--tattcttatttgaaatacaggtt------cctgcg 35946590  T
Q  268 aaaccaatgcggattgcaaatgtcgtaatcataaaagaccagattgtctttggcataaatgttattgctattaagtg 344  Q
     ||| || | ||| |||||||||| | || |||||||||||| |||||||||| |  ||||||||||||||||||||    
T  35946589 caacaaaggaggagtgcaaatgtcctgataataaaagaccagcttgtctttggaaacaatgttattgctattaagtg 35946513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 464 - 683
Target Start/End: Original strand, 22576541 - 22576756
Alignment:
Q  464 tgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataattaaaacaacca 563  Q
    |||||| |||||||||||||||| ||| |||||||||||||||  || ||  ||| |||||||||||    ||||||||||||||| || || || ||||    
T  22576541 tgcatgcaatgttctagactcttttagatgcatgtggtaccaaaggg-ttccgaagataattttaccgttatgaatccaccaacatgataaacaccacca 22576639  T
Q  564 attacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttgaagtaaaagact 662  Q
    |||| |||||||||||||||||||||||||| | || |||||||| |||||   | ||||| || |||||| |||||||||  |||| |||| || ||||    
T  22576640 attatgttctgcagaagctatgtaataaacaccacctattacattcttcaa---atcacctcaatatgactatgaatgcatgaacttcaagt-aaggact 22576735  T
Q  663 cgacaatgcacaaatcaccaa 683  Q
    | ||||||||||| |||||||    
T  22576736 caacaatgcacaagtcaccaa 22576756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 35984557 - 35984704
Alignment:
Q  101 tttcatcatcttcctatcactaattctggctgtaattagccaacatcgtaagtccattttcacatccatttaaatgtttcttatttatcatatataaaat 200  Q
    |||||||||||| ||||| |||||||||| ||||| | |||||||  |||||| ||||||||||  ||||| ||||||||||||| ||||||||||||||    
T  35984557 tttcatcatcttgctatctctaattctggttgtaactggccaacacagtaagtacattttcacacacatttcaatgtttcttattaatcatatataaaat 35984656  T
Q  201 ctttcacacccccttcttgtaacattcatttgtattcttatttgaaatacag 252  Q
     |||   | |||||||| ||||||||||||  |||||||| |||||||||||    
T  35984657 attt--tatccccttctagtaacattcatt--tattcttaattgaaatacag 35984704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 615
Target Start/End: Original strand, 18994838 - 18994918
Alignment:
Q  535 tgaatccaccaacataattaaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaa 615  Q
    |||||| ||||||||||| || || |||||||| ||||||||||||||||||||||| || | ||||||||||| ||||||    
T  18994838 tgaatctaccaacataataaacactaccaattatgttctgcagaagctatgtaataagcaccaccaattacattcttcaaa 18994918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 724
Target Start/End: Complemental strand, 18331833 - 18331767
Alignment:
Q  656 aaagactcgacaatgcacaaatcaccaaactatattatacattaacttaca-catcatataatatcttca 724  Q
    |||||||||||||||||||||||||||||||||||||||   ||| ||||| ||||||||||||||||||    
T  18331833 aaagactcgacaatgcacaaatcaccaaactatattata---taatttacaccatcatataatatcttca 18331767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 7513726 - 7513680
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  7513726 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 7513680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 596
Target Start/End: Original strand, 23157904 - 23158048
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttcta--gctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacata 550  Q
    |||||| ||||||||| |||| || || |||||||||  | ||||||||||||||  ||  | |||| | |||||||||||   ||||||||||||| ||    
T  23157904 caattaacaaatgcatataatattttatactcttctatagatgcatgtggtaccatatgattcttgaga-taattttaccattatgaatccaccaacgta 23158002  T
Q  551 attaaaacaaccaattacgttctgcagaagctatgtaataaacatc 596  Q
    || || |  ||||| |||||| |||| |||||||||||||||||||    
T  23158003 ataaacatcaccaaatacgttttgcaaaagctatgtaataaacatc 23158048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 596
Target Start/End: Original strand, 23569161 - 23569305
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttcta--gctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacata 550  Q
    |||||| ||||||||| |||| || || |||||||||  | ||||||||||||||  ||  | |||| | |||||||||||   ||||||||||||| ||    
T  23569161 caattaacaaatgcatataatattttatactcttctatagatgcatgtggtaccatatgattcttgaga-taattttaccattatgaatccaccaacgta 23569259  T
Q  551 attaaaacaaccaattacgttctgcagaagctatgtaataaacatc 596  Q
    || || |  ||||| |||||| |||| |||||||||||||||||||    
T  23569260 ataaacatcaccaaatacgttttgcaaaagctatgtaataaacatc 23569305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 42180073 - 42180027
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  42180073 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 42180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 22331164 - 22331209
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  22331164 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 22331209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 45619743 - 45619698
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  45619743 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 45619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 35933184 - 35933109
Alignment:
Q  34 ttgtttgtttgttacatgcaattgtaaggacacataatatggctgaaattctaaaaattctttatgttttcatcatc 110  Q
    |||||||||  |||||||||| | ||| || ||| |||||||||||||||| ||||||| |||||| ||||||||||    
T  35933184 ttgtttgttaattacatgcaaat-taaagagacaaaatatggctgaaattcaaaaaattgtttatgctttcatcatc 35933109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 573
Target Start/End: Complemental strand, 23154503 - 23154388
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataattaaa-a 557  Q
    ||||||||||| ||||||||| || ||||||  || |||||||| |||||| |||  | | |||||||||||  ||||||||||| ||| |||  ||| |    
T  23154503 tcaaatgcatgcaatgttctaaacacttctatatgtatgtggtatcaattgaattccggagataattttaccgtattgaatccactaacgtaacaaaaca 23154404  T
Q  558 caaccaattacgttct 573  Q
    | ||||||||||||||    
T  23154403 ccaccaattacgttct 23154388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 573
Target Start/End: Complemental strand, 23565760 - 23565645
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataattaaa-a 557  Q
    ||||||||||| ||||||||| || ||||||  || |||||||| |||||| |||  | | |||||||||||  ||||||||||| ||| |||  ||| |    
T  23565760 tcaaatgcatgcaatgttctaaacacttctatatgtatgtggtatcaattgaattccggagataattttaccgtattgaatccactaacgtaacaaaaca 23565661  T
Q  558 caaccaattacgttct 573  Q
    | ||||||||||||||    
T  23565660 ccaccaattacgttct 23565645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 390
Target Start/End: Complemental strand, 35946510 - 35946480
Alignment:
Q  360 aaataattctatgttacttttaataagctac 390  Q
    |||||||||||||||||||||||||||||||    
T  35946510 aaataattctatgttacttttaataagctac 35946480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 24533326 - 24533277
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggta 502  Q
    ||||||| ||||| ||| |||||||||||||| ||||| |||||||||||    
T  24533326 caattattaaatggatgcaatgttctagactcatctagatgcatgtggta 24533277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 461 - 746
Target Start/End: Original strand, 13487797 - 13488076
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataattaaaacaa 560  Q
    ||||||||| |||||||||||| ||||||  |||||||||||||||||||| |  | | |||||||||||| ||||||| ||| |||||||| || || |    
T  13487797 aaatgcatgcaatgttctagacacttctacatgcatgtggtaccaattggactccggagataattttaccatattgaatgcacgaacataataaacacca 13487896  T
Q  561 ccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttgaagtaaaag 659  Q
    ||||| ||||||||| ||||| |||||  ||||| | ||||| ||||| |||||||   ||||| ||||||||| ||| |||||  |||| |||| ||||    
T  13487897 ccaataacgttctgctgaagcaatgtatcaaacaccaccaatgacattcttcaaaa---cacctcaacatgactatgattgcatgaacttcaagt-aaag 13487992  T
Q  660 actcgacaatgcacaaatcaccaaactatattatacattaacttacacatcatataatatcttcaccaattaacattataatcacca 746  Q
    |||||||||||||||| |||||||||||||||||||   || || |||||||||||||||||||||||||||| || ||||||||||    
T  13487993 actcgacaatgcacaactcaccaaactatattatac---aatttccacatcatataatatcttcaccaattaatataataatcacca 13488076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 456 - 543
Target Start/End: Original strand, 26427114 - 26427201
Alignment:
Q  456 ttatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccac 543  Q
    ||||||| |||||| |||||||||||||||||||  |||| |||||||||||||||||  ||| |||||||||||| |||||||||||    
T  26427114 ttatcaagtgcatgcaatgttctagactcttctaaatgcacgtggtaccaattggattccgaagataattttaccatattgaatccac 26427201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 613
Target Start/End: Complemental strand, 17151105 - 17150954
Alignment:
Q  462 aatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataattaaaacaac 561  Q
    |||||||| |||||| ||||||||| ||| ||||||||||||||||||||||  | | ||||||| |||   |||||||||| ||| |||| || |        
T  17151105 aatgcatgcaatgttttagactcttttagatgcatgtggtaccaattggattccggagataatttaaccgttttgaatccactaacgtaataaacatcgg 17151006  T
Q  562 caattacgttctgcagaagctatgtaataaacatctccaattacatttttca 613  Q
    | ||||||||||||| |||| |||||| |||||||  |||||||||| ||||    
T  17151005 ccattacgttctgcataagcaatgtaacaaacatcgacaattacattcttca 17150954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 457 - 543
Target Start/End: Complemental strand, 6461460 - 6461374
Alignment:
Q  457 tatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccac 543  Q
    ||||||||||||| |||||| |||||||||| || ||||||||||||||||| ||||  ||| |||||||| ||  |||||||||||    
T  6461460 tatcaaatgcatgaaatgttttagactcttcaagatgcatgtggtaccaattcgattccgaagataattttgccgtattgaatccac 6461374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 506
Target Start/End: Complemental strand, 6210623 - 6210570
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaa 506  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  6210623 caattatcaaatgcatgcaatgttctagactcttctagatgcatatggtaccaa 6210570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 530
Target Start/End: Complemental strand, 9128969 - 9128899
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttacc 530  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||| |||||||| || | |||||||||||    
T  9128969 tcaaatgcatacaatgttctagactcttctagatgcatgtggtacc-attggattctggagataattttacc 9128899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 635 - 684
Target Start/End: Original strand, 26427295 - 26427343
Alignment:
Q  635 tgaatgcatagacttgaagtaaaagactcgacaatgcacaaatcaccaaa 684  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  26427295 tgaatgcatagactttaagtaaa-gactcgacaatgcacaaatcaccaaa 26427343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 663 - 728
Target Start/End: Complemental strand, 17999191 - 17999128
Alignment:
Q  663 cgacaatgcacaaatcaccaaactatattatacattaacttaca-catcatataatatcttcaccaa 728  Q
    |||||||||||||||||| |||||||||||||   ||| ||||| ||||||||||||||||||||||    
T  17999191 cgacaatgcacaaatcacaaaactatattata---taatttacaccatcatataatatcttcaccaa 17999128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 14253007 - 14252961
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  14253007 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 14252961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 39293413 - 39293367
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||    
T  39293413 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacca 39293367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 14278170 - 14278125
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||    
T  14278170 tcaaatgcatgcaatgttctagactcttctaaatgcatgtggtacc 14278125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 45148081 - 45148126
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  45148081 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 45148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 503
Target Start/End: Original strand, 12246472 - 12246516
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtac 503  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||    
T  12246472 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtac 12246516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 16065055 - 16065102
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaa 506  Q
    |||||| |||| ||||||||||| |||||||| |||||||||||||||    
T  16065055 tcaaattcatgcaatgttctagaatcttctagatgcatgtggtaccaa 16065102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 16093314 - 16093368
Alignment:
Q  461 aaatgcatgtaatgttctagactctt--ctagctgcatgtggtaccaattggatt 513  Q
    ||||||||| |||| |||||||||||  |||| ||||||||||||||||||||||    
T  16093314 aaatgcatgcaatgatctagactcttttctagttgcatgtggtaccaattggatt 16093368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 14974232 - 14974186
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||||| || ||||||||||||| |||||| ||||||||||||||    
T  14974232 tcaaatgcttgcaatgttctagactattctagatgcatgtggtacca 14974186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 15403708 - 15403662
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||||| || ||||||||||||| |||||| ||||||||||||||    
T  15403708 tcaaatgcttgcaatgttctagactattctagatgcatgtggtacca 15403662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 44306943 - 44306897
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||||    
T  44306943 tcaaatgcatgcaatattctagactcttctacatgcatgtggtacca 44306897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 502
Target Start/End: Complemental strand, 16436448 - 16436407
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggta 502  Q
    |||||||||  ||||||||||||||||||| |||||||||||    
T  16436448 aaatgcatgctatgttctagactcttctagatgcatgtggta 16436407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 696
Target Start/End: Original strand, 17910648 - 17910708
Alignment:
Q  635 tgaatgcatagacttgaagtaaaagactcgacaatgcacaaatcaccaaactatattataca 696  Q
    ||||||||| ||||| ||| ||| || || |||||||||| |||||||||||||||||||||    
T  17910648 tgaatgcatggacttcaagcaaa-gattccacaatgcacatatcaccaaactatattataca 17910708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 19066112 - 19066157
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||| |||| |||||||||||||||||||| |||||| ||||||    
T  19066112 tcaaatacatgcaatgttctagactcttctagatgcatgcggtacc 19066157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 453 - 683
Target Start/End: Original strand, 25261846 - 25262074
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttacca-aattgaatccaccaacataa 551  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||  || || |||||||||  | |||||||||||||||||    
T  25261846 caattaacaagtgcatgtaatgttctagactcttctagatgcatgtggtaccaataggatttgaaagatgattttaccattaatgaatccaccaacataa 25261945  T
Q  552 ttaaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttg 650  Q
    | || |  |||||||| ||||||||||| ||| ||| |||| ||| | ||||||||| |||||   | ||||| || |||||| ||||||||| |||||     
T  25261946 taaacatcaccaattatgttctgcagaaactaagtattaaatatcactaattacattcttcaa---atcacctcaaaatgactatgaatgcatggacttc 25262042  T
Q  651 aagtaaaagactcgacaatgcacaaatcaccaa 683  Q
    |||| || ||||||| |||||| || |||||||    
T  25262043 aagt-aaggactcgataatgcataactcaccaa 25262074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 461 - 683
Target Start/End: Original strand, 24623310 - 24623529
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaa-attgaatccaccaacataattaaaaca 559  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||| |||||||  | | |||||||||||   | ||||||||| |||||||| || |      
T  24623310 aaatgcatgcaatgttctaaactcttctagatgcatgtggtacca-ttggattccggagataattttacccttaatgaatccactaacataataaatatc 24623408  T
Q  560 accaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttgaagtaaaa 658  Q
    |||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||   | ||||| || |||||| ||||||||  ||||| |||| ||     
T  24623409 accaattatgttctgtagaagctatgtaataaacaccaccaattacattcttcaa---atcacctcaatatgactatgaatgcaaggacttcaagt-aag 24623504  T
Q  659 gactcgacaatgcacaaatcaccaa 683  Q
    |||||||||||||| || |||||||    
T  24623505 gactcgacaatgcataactcaccaa 24623529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 31195949 - 31195902
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaa 506  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  31195949 tcaaatgcatgcaatgttctagactcttctagatgcatgtggtaccaa 31195902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 656 - 728
Target Start/End: Original strand, 28932860 - 28932930
Alignment:
Q  656 aaagactcgacaatgcacaaatcaccaaactatattatacattaacttaca-catcatataatatcttcaccaa 728  Q
    |||||||||||||||||||||||| ||||||||||||||   ||| || || ||||||||||||| ||||||||    
T  28932860 aaagactcgacaatgcacaaatcatcaaactatattata---taattttcaccatcatataatattttcaccaa 28932930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 16041210 - 16041164
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  16041210 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 16041164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 16042886 - 16042840
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  16042886 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 16042840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 18610757 - 18610803
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  18610757 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 18610803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 17500516 - 17500561
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  17500516 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 17500561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 25608640 - 25608685
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  25608640 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 25608685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 18032848 - 18032900
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||| ||||||| || |||||||||||||| ||||| ||||||||||||||    
T  18032848 caattaacaaatgcgtgcaatgttctagactcatctagatgcatgtggtacca 18032900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 462 - 504
Target Start/End: Original strand, 17265409 - 17265451
Alignment:
Q  462 aatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||| |||||||||||||||||||| |||||| ||||||    
T  17265409 aatgcatgcaatgttctagactcttctagatgcatgcggtacc 17265451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 20177704 - 20177658
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||||    
T  20177704 tcaaatgcatgcaatattctagactcttctacatgcatgtggtacca 20177658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 20222431 - 20222385
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||||    
T  20222431 tcaaatgcatgcaatattctagactcttctacatgcatgtggtacca 20222385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 728
Target Start/End: Original strand, 15062648 - 15062712
Alignment:
Q  662 tcgacaatgcacaaatcaccaaactatattatacattaacttaca-catcatataatatcttcaccaa 728  Q
    ||||||||||||||||||| |  |||||||||||   || ||||| ||||||||||||||||||||||    
T  15062648 tcgacaatgcacaaatcacaactctatattatac---aatttacaccatcatataatatcttcaccaa 15062712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 23543861 - 23543820
Alignment:
Q  464 tgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||| |||||||||||||||||||| |||||||| |||||    
T  23543861 tgcatgcaatgttctagactcttctagatgcatgtgatacca 23543820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 461 - 615
Target Start/End: Complemental strand, 101151 - 100996
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaa-attgaatccaccaacataattaaaaca 559  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||| | |||||  | | ||||||||| ||  | |||||||||||||||||| || |      
T  101151 aaatgcatgcaatgttctagactcatctagatgcatgtggtaccattaggattcaggagataattttatcattaatgaatccaccaacataataaacatc 101052  T
Q  560 accaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaa 615  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  101051 accaattatgttctgcagaagccatgtaataaatatctccaattacattcttcaaa 100996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 9e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 473 - 683
Target Start/End: Original strand, 19266891 - 19267104
Alignment:
Q  473 tgttctagactcttctagctgcatgtggtaccaattggattttgaaaataatttt-accaaattgaatccaccaacataattaaaacaaccaattacgtt 571  Q
    |||| ||||||||||||| ||||||| |||||| | ||||| || | |||||||| ||||   |||||||||||||||||| || || |||||||| |||    
T  19266891 tgttgtagactcttctagatgcatgtagtacca-taggattctggagataatttttaccattatgaatccaccaacataataaacaccaccaattatgtt 19266989  T
Q  572 ctgcagaagctatgtaataaacatctccaattacatttttcaaaatacc---accttaacatgact-tgaatgcatagacttgaagtaaaagactcgaca 667  Q
     |||||||||||||||||||||| | ||||||||||| ||||||  |||   || | ||||||||| ||||||||| ||||| |||| || |||||||||    
T  19266990 atgcagaagctatgtaataaacaccaccaattacattcttcaaatcacctcaacatcaacatgactatgaatgcatggacttcaagt-aaggactcgaca 19267088  T
Q  668 atgcacaaatcaccaa 683  Q
    |||||||| |||||||    
T  19267089 atgcacaactcaccaa 19267104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 543
Target Start/End: Original strand, 37275790 - 37275880
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccac 543  Q
    |||||||||| |||||| |||||||||| ||||||||  | ||||||||||||||||||||  | | |||||||||||  |||||||||||    
T  37275790 caattatcaagtgcatgcaatgttctaggctcttctaaatacatgtggtaccaattggattccggagataattttaccgtattgaatccac 37275880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 461 - 505
Target Start/End: Complemental strand, 19318165 - 19318121
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  19318165 aaatgcatgtaatgttctagactcttctagatgcatgtggtacca 19318121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 453 - 543
Target Start/End: Original strand, 37278061 - 37278151
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccac 543  Q
    |||||||||| |||||| |||||||||||||||| ||| | || |||||||||||||||||  | | ||||||||||   |||||||||||    
T  37278061 caattatcaagtgcatgcaatgttctagactcttttagatacacgtggtaccaattggattccggagataattttacagcattgaatccac 37278151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 25340922 - 25340974
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||| |||||||||| |||||||||||||| ||||| ||||||||||||||    
T  25340922 caattaacaaatgcatgcaatgttctagactcatctagatgcatgtggtacca 25340974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 34937948 - 34937995
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||||||||| |||||||||||||||||||| |||||| |||||||    
T  34937948 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacca 34937995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 11765096 - 11765051
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  11765096 tcaaatgcatgaaatgttctagactcttctagatgcatgcggtacc 11765051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 14343551 - 14343506
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| ||||||| |||||||||||| |||||||||||||    
T  14343551 tcaaatgcatgcaatgttccagactcttctagatgcatgtggtacc 14343506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 16837051 - 16837014
Alignment:
Q  460 caaatgcatgtaatgttctagactcttctagctgcatg 497  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  16837051 caaatgcatgcaatgttctagactcttctagatgcatg 16837014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 615
Target Start/End: Original strand, 33934 - 34095
Alignment:
Q  457 tatcaaatgcatgtaatgttctagactcttct--agctgcatgtggtaccaattggattttgaaaataattttaccaa-attgaatccaccaacataatt 553  Q
    |||||| |||||| ||||||||||||||||||  || ||| | |||||||| | |||||  | | |||||||||||   | ||||||||||||||||||     
T  33934 tatcaagtgcatgcaatgttctagactcttctctagatgcttatggtaccattaggattccggagataattttaccgttaatgaatccaccaacataata 34033  T
Q  554 aaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaa 615  Q
    || |  |||||||| ||||||||||||||||||||||||||||  |||||||||| ||||||    
T  34034 aacatcaccaattatgttctgcagaagctatgtaataaacatcatcaattacattcttcaaa 34095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 553
Target Start/End: Original strand, 33826 - 33925
Alignment:
Q  457 tatcaaatgcatgtaatgttctagactct--tctagctgcatgtggtaccaattggattttgaaaataattttacc-aaattgaatccaccaacataatt 553  Q
    ||||||||||||| |||||||||||||||  ||||| |||||||||||||| | |||||  | | |||||||||||   | |||||||||||||||||||    
T  33826 tatcaaatgcatgcaatgttctagactcttctctagatgcatgtggtaccattaggattccggagataattttaccgttaatgaatccaccaacataatt 33925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 615
Target Start/End: Original strand, 23295736 - 23295897
Alignment:
Q  457 tatcaaatgcatgtaatgttctagactcttct--agctgcatgtggtaccaattggattttgaaaataattttaccaa-attgaatccaccaacataatt 553  Q
    ||||| ||||||||||||||||||||||||||  || |||||||||||||| | |||||    | |||||||||||   | ||||||||||||||| ||     
T  23295736 tatcagatgcatgtaatgttctagactcttctctagatgcatgtggtaccattaggattccagagataattttaccgttaatgaatccaccaacatgata 23295835  T
Q  554 aaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaa 615  Q
    || |  | |||||| |||||||||||||||||||||||||||  ||||||||||| ||||||    
T  23295836 aacatcatcaattatgttctgcagaagctatgtaataaacattaccaattacattcttcaaa 23295897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 722
Target Start/End: Complemental strand, 15482547 - 15482287
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattg--gattttgaaaataattttaccaaattgaatccaccaacataattaaa 556  Q
    |||| |||||| |||||||||||| | ||||  |||||||||||||||||   ||||||| |  |||| ||||| | ||  |||||||||| |||| ||     
T  15482547 tcaagtgcatgcaatgttctagacacctctacatgcatgtggtaccaattttagattttggaggtaatcttacctagtt--atccaccaacgtaataaac 15482450  T
Q  557 acaaccaattacgttctgcagaagcta-tgtaataaacatctccaattacatttttca--aaataccaccttaacatgact-tgaatgcatagacttg-a 651  Q
    || |||||||||||||| ||  | ||| | ||||||||| | ||||||||||||||||  ||||||    | || |||||| ||||||||| |||||  |    
T  15482449 accaccaattacgttcttcaccaactaatataataaacaccaccaattacatttttcacgaaatac----tcaatatgactatgaatgcatggactttca 15482354  T
Q  652 agtaaaagactcgacaatgcacaaatcaccaaactatattatacattaacttaca-catcatataatatctt 722  Q
    |||||| |||||||||||||||| |||||| ||||||||||||   ||| ||||| ||||||||||||||||    
T  15482353 agtaaa-gactcgacaatgcacatatcacc-aactatattata---taatttacaccatcatataatatctt 15482287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 508
Target Start/End: Complemental strand, 12466223 - 12466174
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaatt 508  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  12466223 tcaaatgcatgcaatgttctagactcttctagatgtatgtggtaccaatt 12466174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 615
Target Start/End: Original strand, 10973380 - 10973460
Alignment:
Q  535 tgaatccaccaacataattaaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaa 615  Q
    |||||||||||||||||| || || |||||||| |||||| ||||||||||||| ||||| |  || ||||||| ||||||    
T  10973380 tgaatccaccaacataataaacaccaccaattatgttctgtagaagctatgtaacaaacaccatcagttacattcttcaaa 10973460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 513
Target Start/End: Original strand, 24217345 - 24217405
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggatt 513  Q
    |||||||||| || ||| |||||||||||||||||||  |||||||||||||||| |||||    
T  24217345 caattatcaagtgaatgcaatgttctagactcttctaaatgcatgtggtaccaataggatt 24217405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 35010987 - 35010940
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||||||||| |||||||||||||||||||| |||||| |||||||    
T  35010987 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacca 35010940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 19627827 - 19627873
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  19627827 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 19627873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 19729039 - 19728998
Alignment:
Q  464 tgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  19729039 tgcatgcaatgttctagactcttctagatgcatgtggtacca 19728998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 22595166 - 22595121
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  22595166 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 22595121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 615
Target Start/End: Original strand, 12975113 - 12975185
Alignment:
Q  543 ccaacataattaaaacaaccaattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaa 615  Q
    |||||||||| || || | |||||| |||||||| ||||||||||||||||| |  |||||||||| ||||||    
T  12975113 ccaacataataaacaccatcaattatgttctgcataagctatgtaataaacaccatcaattacattcttcaaa 12975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 503
Target Start/End: Original strand, 16374879 - 16374923
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtac 503  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||    
T  16374879 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtac 16374923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 504
Target Start/End: Complemental strand, 31162560 - 31162516
Alignment:
Q  460 caaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||    
T  31162560 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 31162516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 17085026 - 17084980
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| ||||||||||||| |||||| |||||| ||||||    
T  17085026 atcaaatgcatgcaatgttctagacttttctagatgcatgcggtacc 17084980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 626 - 724
Target Start/End: Complemental strand, 23845709 - 23845612
Alignment:
Q  626 aacatgac-ttgaatgcatagacttgaagtaaaagactcgacaatgcacaaatcaccaaactatattatacattaacttaca-catcatataatatcttc 723  Q
    |||||||| |||||||||| |||||  | | |||||||||||||| |||||||||| |  ||||||||||   ||| ||||| |||||||||||||||||    
T  23845709 aacatgacattgaatgcatggactttcaattaaagactcgacaatacacaaatcacaactctatattata---taatttacatcatcatataatatcttc 23845613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 496
Target Start/End: Complemental strand, 11374526 - 11374489
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcat 496  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  11374526 tcaaatgcatgcaatgttctagactcttctagatgcat 11374489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 17858054 - 17858009
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||  |||||||| ||||    
T  17858054 tcaaatgcatgcaatgttctagactcttctaaatgcatgtgatacc 17858009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 496
Target Start/End: Complemental strand, 29162185 - 29162148
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcat 496  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  29162185 tcaaatgcatgcaatgttctagactcttctagatgcat 29162148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1869 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 683
Target Start/End: Original strand, 798 - 1015
Alignment:
Q  464 tgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaa-attgaatccaccaacataattaaaacaacc 562  Q
    |||||| ||||||||| |||||||||| ||||| ||||| |||| |||||  ||| ||||||||| |   | ||||||||| |||||||| || |  |||    
T  798 tgcatgcaatgttctaaactcttctagatgcatatggtagcaataggattccgaagataattttatcgctaatgaatccacaaacataataaacatcacc 897  T
Q  563 aattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttgaagtaaaagac 661  Q
    |||||  || |||| ||| ||||||||||||||| ||||||||||| |||||     ||||| || |||||| ||||||||| ||||| |||| ||||||    
T  898 aattatattatgcataagttatgtaataaacatcaccaattacattcttcaa---ttcacctcaaaatgactatgaatgcatggacttcaagt-aaagac 993  T
Q  662 tcgacaatgcacaaatcaccaa 683  Q
    ||||||||||| || |||||||    
T  994 tcgacaatgcataactcaccaa 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 459 - 530
Target Start/End: Complemental strand, 13908744 - 13908673
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttacc 530  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||||||||| | | |||||||||||    
T  13908744 tcaaatgcatgtaatgttctagacacctctacctgcatgtggtaccaattggatttcggagataattttacc 13908673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 10116053 - 10115963
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccac 543  Q
    ||||||||||||||||| |||||||||||||||| |   |||||||||||| |||| |||| |||| |||||||||||  |||||||||||    
T  10116053 caattatcaaatgcatgcaatgttctagactctttttaatgcatgtggtactaattagattctgaatataattttaccgtattgaatccac 10115963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 453 - 513
Target Start/End: Original strand, 20847392 - 20847452
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggatt 513  Q
    |||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  20847392 caatgatcaaatgcatgcaatgttctagactcttctagatacatgtggtaccaattggatt 20847452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 573
Target Start/End: Original strand, 13933302 - 13933416
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaacataattaaaac 558  Q
    ||||||||||| ||||||| |||| ||||||  |||||||| ||| |||||||||   || |||||||||||  ||||||||||| ||| |||  || ||    
T  13933302 tcaaatgcatgcaatgttccagacacttctacatgcatgtgatactaattggattccaaagataattttaccgtattgaatccactaacgtaacaaacac 13933401  T
Q  559 aaccaattacgttct 573  Q
     ||||||||||||||    
T  13933402 caccaattacgttct 13933416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 728
Target Start/End: Complemental strand, 11923570 - 11923499
Alignment:
Q  656 aaagactcgacaatgcacaaatcacc-aaactatattatacattaacttaca-catcatataatatcttcaccaa 728  Q
    |||||||||||||||||||||||||| |||||||||||||   ||| ||||| || |||||||||||||||||||    
T  11923570 aaagactcgacaatgcacaaatcaccaaaactatattata---taatttacaccaccatataatatcttcaccaa 11923499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 19699277 - 19699231
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  19699277 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 19699231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 19709862 - 19709816
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  19709862 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 19709816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 40902408 - 40902363
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  40902408 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 40902363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 502
Target Start/End: Complemental strand, 41918458 - 41918415
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggta 502  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||    
T  41918458 tcaaatgcatgcaatgttctagactcttctagatgcatgcggta 41918415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 453 - 503
Target Start/End: Original strand, 14616503 - 14616553
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtac 503  Q
    |||||| ||| |||||| |||||||||||||| ||||| ||||||||||||    
T  14616503 caattaacaagtgcatgcaatgttctagactcctctagatgcatgtggtac 14616553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 696
Target Start/End: Complemental strand, 16028786 - 16028745
Alignment:
Q  656 aaagactcgacaatgcacaaatcaccaa-actatattataca 696  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  16028786 aaagactcgacaatgcacaaatcaccaatcctatattataca 16028745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 457 - 587
Target Start/End: Complemental strand, 3867 - 3734
Alignment:
Q  457 tatcaaatgcatgtaatgttctagactct--tctagctgcatgtggtaccaattggattttgaaaataattttacc-aaattgaatccaccaacataatt 553  Q
    ||||||||||||| |||||||||||||||  ||||  |||||||||||||||| |||||  | | ||||||| |||   | ||||||||||||||||||     
T  3867 tatcaaatgcatgcaatgttctagactcttctctaaatgcatgtggtaccaataggattccggagataatttcaccgttaatgaatccaccaacataata 3768  T
Q  554 aaaacaaccaattacgttctgcagaagctatgta 587  Q
    || |  | |||||| |||||||||||||||||||    
T  3767 aacattatcaattatgttctgcagaagctatgta 3734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 506
Target Start/End: Original strand, 11525 - 11578
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaa 506  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  11525 caattatcaaatgcatgcaatattctagactcttctagatgcatgtggtaccaa 11578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 459 - 507
Target Start/End: Complemental strand, 15554 - 15506
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaat 507  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  15554 tcaaatgcatgcaatgttctagactcttctagatgcatgtggtaccaat 15506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 453 - 530
Target Start/End: Complemental strand, 4190 - 4113
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttacc 530  Q
    |||||| ||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||| ||   |||||||||||    
T  4190 caattaacaagtgcatgcaatattctagactcttctagatgcatgtggtaccatttggattatggggataattttacc 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 543
Target Start/End: Original strand, 28868 - 28953
Alignment:
Q  459 tcaaatgcatgtaatgttct-agactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccac 543  Q
    |||| ||||||||||||||| |||| |||||| |||||||||||||||| ||||||  | | |||||||||||  |||||||||||    
T  28868 tcaagtgcatgtaatgttcttagacacttctacctgcatgtggtaccaactggattccggagataattttaccgtattgaatccac 28953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 637 - 696
Target Start/End: Complemental strand, 34404 - 34346
Alignment:
Q  637 aatgcatagacttgaagtaaaagactcgacaatgcacaaatcaccaaactatattataca 696  Q
    ||||||||||||| ||| ||| |||||||| |||||||||||| ||||||||||||||||    
T  34404 aatgcatagacttcaagcaaa-gactcgacgatgcacaaatcatcaaactatattataca 34346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 359 - 313
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  359 atcaaatgcatgaaatgttctagactcttctagatgcatgcggtacc 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 26803 - 26849
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  26803 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 26849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 27818 - 27864
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  27818 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 27864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 39814 - 39860
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  39814 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 39860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 256084 - 256038
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||    
T  256084 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacca 256038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 20252695 - 20252741
Alignment:
Q  458 atcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||    
T  20252695 atcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 20252741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 33395838 - 33395883
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  33395838 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 33395883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 11845112 - 11845199
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaattggattttgaaaataattttaccaaattgaatccaccaac 547  Q
    |||| |||||| ||| |||||||| ||||||  |||||||||||||||||| |||| | | |||||||||||  | |||||||||||||    
T  11845112 tcaagtgcatgcaatattctagacacttctacatgcatgtggtaccaattgaatttgggagataattttaccgta-tgaatccaccaac 11845199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 504
Target Start/End: Complemental strand, 21199281 - 21199238
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||    
T  21199281 aaatgcatgcaatgttctagactcgtctagatgcatgtggtacc 21199238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 209 - 164
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  209 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 20217 - 20262
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacc 504  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  20217 tcaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 20262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 461 - 505
Target Start/End: Original strand, 5850 - 5894
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||    
T  5850 aaatgcatgcaatgttctagacccttctagatgcatgtggtacca 5894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 506
Target Start/End: Complemental strand, 14631 - 14584
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtaccaa 506  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||||||    
T  14631 tcaaatgcatgcaatgttctagactattctagatgcatgcggtaccaa 14584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 505
Target Start/End: Complemental strand, 36464 - 36418
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| |||||||||||||||||||  |||||| |||||||    
T  36464 tcaaatgcatgcaatgttctagactcttctatatgcatgcggtacca 36418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 505
Target Start/End: Original strand, 11125 - 11171
Alignment:
Q  459 tcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    ||||||||||| ||||||||||||||||| || |||||| |||||||    
T  11125 tcaaatgcatgcaatgttctagactcttcaagatgcatgcggtacca 11171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 453 - 503
Target Start/End: Complemental strand, 200874 - 200824
Alignment:
Q  453 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtac 503  Q
    |||||| ||| |||||| |||||||||||||| ||||| ||||||||||||    
T  200874 caattaacaagtgcatgcaatgttctagactcctctagatgcatgtggtac 200824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 11105 - 11060
Alignment:
Q  460 caaatgcatgtaatgttctagactcttctagctgcatgtggtacca 505  Q
    |||||||||| |||||||||||| ||||||  ||||||||||||||    
T  11105 caaatgcatgcaatgttctagacacttctacatgcatgtggtacca 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 683
Target Start/End: Complemental strand, 48808 - 48701
Alignment:
Q  573 tgcagaagctatgtaataaacatctccaattacatttttcaaaataccaccttaacatgact-tgaatgcatagacttgaagtaaaagactcgacaatgc 671  Q
    ||||||||| |||||||||||| | |||||||||||  ||||   | |||||||| |||| | ||||||||| ||||| |||| |||||||||||||||     
T  48808 tgcagaagcaatgtaataaacaccgccaattacattcctcaa---atcaccttaaaatgattatgaatgcatggacttcaagt-aaagactcgacaatga 48713  T
Q  672 acaaatcaccaa 683  Q
    | || |||||||    
T  48712 ataactcaccaa 48701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 502
Target Start/End: Complemental strand, 26078 - 26037
Alignment:
Q  461 aaatgcatgtaatgttctagactcttctagctgcatgtggta 502  Q
    |||||||||  ||||||||||||||||||| |||||||||||    
T  26078 aaatgcatgctatgttctagactcttctagatgcatgtggta 26037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 615
Target Start/End: Complemental strand, 95211 - 95158
Alignment:
Q  562 caattacgttctgcagaagctatgtaataaacatctccaattacatttttcaaa 615  Q
    |||||| ||| |||| ||||||||||||||||||| ||| ||||||| ||||||    
T  95211 caattatgttatgcataagctatgtaataaacatcaccagttacattcttcaaa 95158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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