View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176-Insertion-6 (Length: 634)
Name: NF5176-Insertion-6
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 7238041 - 7238450
Alignment:
| Q |
8 |
gtgacgctcgttacctttgtgcttgtgaccgtcaagatctcttggcgtcttctttcctcctatttttggcgtctaacacccaagtacctgaaatgtaaac |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7238041 |
gtgacgctcgttacctttgtgcttgtgaccatcaagacctcttggcgtcttctttcctcccatttttggcgtctaacacccaagtacctgaaatgtaaac |
7238140 |
T |
|
| Q |
108 |
aaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaaataagctttttagataatgtactttgtgtgttatcaattgcacgc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7238141 |
aaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaaataagctttttagataatgtactttgtgtgttatcaattgcacgc |
7238240 |
T |
|
| Q |
208 |
ctgtatattcatatcttatactcattacttgcactcttatttaccacaattcgttcataaaggcacacatagagttacacaacctttaatagttgcactc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7238241 |
ctgtatattcatatcttatactcattacttgcactcttatttaccacaattcgttcataaaggcacacatagagttacacaacctttaatagttgcactc |
7238340 |
T |
|
| Q |
308 |
catctattcatctcatataccccttacttgcacgcatgtctaaaatgctacgttcacaaaggcatacaatgaattacccaacttttaatgattgcacacc |
407 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
7238341 |
catctattcatcccatataccccttacttgcacgcatgtctaaaatgctacgttcacaaaggaatacaatgaattacccaacttttaatgatcgcacacc |
7238440 |
T |
|
| Q |
408 |
tttcttttta |
417 |
Q |
| |
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|||||||||| |
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| T |
7238441 |
tttcttttta |
7238450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 409 - 634
Target Start/End: Original strand, 7238991 - 7239215
Alignment:
| Q |
409 |
ttctttttatctcttatacttctcacttacacaactatctaccatggttatctcacaaatgcacgcatagagccacaaaaccttaaatgcttgtacacct |
508 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7238991 |
ttctttttatctcttatacttctcactcacacaactatctaccatggttctctcacaaatgcacacatagagccacaaaaccttaaatgcttgtacacct |
7239090 |
T |
|
| Q |
509 |
atctatttatctcctatactccttgcttccatatttatatataatgattcccttacaaggtgcacacattgatccacacatcttttaatgagtacactct |
608 |
Q |
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||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
7239091 |
atcaatttatctcctatactccttgcttgcacatttatatataatgattcccttacaa-gtgcacacattgatccacacatcttttaatgagtacaccct |
7239189 |
T |
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| Q |
609 |
aactaccacactaatagccatatcta |
634 |
Q |
| |
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| T |
7239190 |
aactaccacgctaatagccatatcta |
7239215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 1826372 - 1826295
Alignment:
| Q |
123 |
accatgcaaaacacgacaaatgactctaaaacaaacgaaaat-aagctttttagataatgtactttgtgtgttatcaa |
199 |
Q |
| |
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||||||||| |||| | || ||||||||||||||| | | || ||||| |||||| |||||| ||||||||||||||| |
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| T |
1826372 |
accatgcaagacacaataattgactctaaaacaaatggatatcaagctatttagacaatgtattttgtgtgttatcaa |
1826295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 29565889 - 29565815
Alignment:
| Q |
88 |
caagtacctgaaatgtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaa |
162 |
Q |
| |
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| T |
29565889 |
caagtacctgaaatgtaaacaaaacaccaacatacaccatgtaaaacgcgacaaatgactctaaaacaaatgaaa |
29565815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 33994999 - 33995032
Alignment:
| Q |
123 |
accatgcaaaacacgacaaatgactctaaaacaa |
156 |
Q |
| |
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| T |
33994999 |
accatgcaaaacacgacaaatggctctaaaacaa |
33995032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 17334526 - 17334567
Alignment:
| Q |
116 |
agcagacaccatgcaaaacacgacaaatgactctaaaacaaa |
157 |
Q |
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|||||| |||||||||||||||||||||||| | |||||||| |
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| T |
17334526 |
agcagataccatgcaaaacacgacaaatgaccccaaaacaaa |
17334567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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