View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176-Insertion-8 (Length: 513)
Name: NF5176-Insertion-8
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Complemental strand, 43954929 - 43954438
Alignment:
| Q |
7 |
aattagtgggcgtgggcatggccatgtagtagtgctcttgtacttgacctaatgagaatcattattataaaaattaggtgcagcagattaatgttctgta |
106 |
Q |
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| T |
43954929 |
aattagttggcgtgggcatggccatgtagtagtgctcttgtacttgacctaatgagaatcattattataaaaattaggtgcagcagattaatgttctgta |
43954830 |
T |
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| Q |
107 |
taacatcaatctaaattcagtattactactagcgcttaaatattgattatggtactagtagcaccgactttgtttttgaaggacacttgttgatgttaac |
206 |
Q |
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| T |
43954829 |
aaccatcaatctaaattcagtattactactagcgcttaaatattgattatggtactagtagcaccaactttgtttttgaaggacacttgttgatgttagc |
43954730 |
T |
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| Q |
207 |
cattttgatcctgggttggctactcaaaagattcagatgaccccttcggtagaattattcatataagtcctggcattggtagatttgttgccaagagtta |
306 |
Q |
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| T |
43954729 |
cattttgatcctgggttggctactcaaaagattcagatgaccccttcagtagaattattcatataagtcctggcattgatagatttgttgccaagagtta |
43954630 |
T |
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| Q |
307 |
caccccaaggtatatctttctactttcttctttctactttgtcctctggtaatctaatagaggactacagctaatttctgtttgttacagacagttgctc |
406 |
Q |
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| T |
43954629 |
caccccaaggtatatctttcta--------------ctttgtcctctggtaatctaatagaggactacagctaatttctgtttgttacagacagttgctc |
43954544 |
T |
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| Q |
407 |
aaagtattacctggtactccagtaattgaaatttatgtggtnnnnnnntgctgattatacatatcaaatgcaggtaataatataattttcccactaaatg |
506 |
Q |
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| T |
43954543 |
aaagtattacctggtactccagtatttgaaatttatgtggt-aaaaaatgctgattatacatatcaaatgcaggtaataatataattttcccactaaacg |
43954445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 35151849 - 35151733
Alignment:
| Q |
218 |
tgggttggctactcaaaagattcagatgaccccttcggtagaattattcatataagtcctggcattggtagatttgttgccaagagttacaccccaaggt |
317 |
Q |
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| T |
35151849 |
tgggtagggtactcaaaaaattcagaggacccttttggtagaataatacgtattagtcctggtatgggcaggttcgttggcaagagttacagtccaaggt |
35151750 |
T |
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| Q |
318 |
at-atctttctactttc |
333 |
Q |
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| T |
35151749 |
atgatctttctagtttc |
35151733 |
T |
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