View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176-Insertion-9 (Length: 464)

Name: NF5176-Insertion-9
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176-Insertion-9
NF5176-Insertion-9
[»] chr5 (1 HSPs)
chr5 (7-462)||(37027040-37027495)
[»] chr7 (10 HSPs)
chr7 (252-318)||(17848945-17849011)
chr7 (244-322)||(31140397-31140475)
chr7 (244-322)||(31153412-31153490)
chr7 (252-318)||(17825727-17825793)
chr7 (244-322)||(31058594-31058672)
chr7 (244-306)||(31103054-31103116)
chr7 (54-91)||(15664673-15664710)
chr7 (270-322)||(31215834-31215886)
chr7 (249-316)||(15676702-15676769)
chr7 (244-333)||(16172959-16173048)
[»] chr1 (9 HSPs)
chr1 (255-316)||(14522256-14522317)
chr1 (255-322)||(14504395-14504462)
chr1 (255-322)||(14468216-14468283)
chr1 (27-106)||(14522028-14522107)
chr1 (27-92)||(15002750-15002815)
chr1 (27-92)||(15011643-15011708)
chr1 (27-92)||(15033095-15033160)
chr1 (27-92)||(15037662-15037727)
chr1 (27-92)||(15041230-15041295)
[»] scaffold0289 (2 HSPs)
scaffold0289 (249-316)||(5194-5261)
scaffold0289 (249-316)||(14027-14094)
[»] scaffold0400 (1 HSPs)
scaffold0400 (27-92)||(13431-13496)
[»] scaffold0365 (1 HSPs)
scaffold0365 (27-92)||(14074-14139)


Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 37027495 - 37027040
Alignment:
Q  7 aactccctccttctaggaagtcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgtttgatttgtgtcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027495 aactccctccttctaggaagtcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgtttgatttgtgtcaa 37027396  T
Q  107 tgctttaacctcattagtaaaagccttgaaattgtgcacttcaccatcaacttcagcatgaagttttttcacagcaacaacttggccagaaggtaaattg 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37027395 tgctttaacctcattagtaaaagccttgaaattgtgcatttcaccatcaacttcagcatgaagttttttcacagcaataacttggccagaaggtaaattg 37027296  T
Q  207 gccttgtaaacagaaccagaacctccttcaccaattcgatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027295 gccttgtaaacagaaccagaacctccttcaccaattcgatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcat 37027196  T
Q  307 aactccatatggaaaaaatatcttgagtttgttcttgttcttctctagcttgcttttgaatttttcttgcttttggcaaatgaatatgtaaagagccacg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027195 aactccatatggaaaaaatatcttgagtttgttcttgttcttctctagcttgcttttgaatttttcttgcttttggcaaatgaatatgtaaagagccacg 37027096  T
Q  407 aaccaggaagactacaagaaatagaataatcaaagcaatacataattccaatttcg 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027095 aaccaggaagactacaagaaatagaataatcaaagcaatacataattccaatttcg 37027040  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 17849011 - 17848945
Alignment:
Q  252 tcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatgg 318  Q
    ||||||||||| |||||||||||||| ||| | ||||| ||||||||||||||| ||||||||||||    
T  17849011 tcatcaaaatcttctgtggcttcaataatactctcatacaccatttttccatcaaaactccatatgg 17848945  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 31140475 - 31140397
Alignment:
Q  244 gatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 322  Q
    |||||||||||||||||| ||| || |||||||||||||||||| | | |||||| ||||||| |||||| ||||||||    
T  31140475 gatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaa 31140397  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 31153490 - 31153412
Alignment:
Q  244 gatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 322  Q
    |||||||||||||||||| ||| || |||||||||||||||||| | | |||||| ||||||| |||||| ||||||||    
T  31153490 gatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcatgactccaaatggaaaa 31153412  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 17825727 - 17825793
Alignment:
Q  252 tcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatgg 318  Q
    ||||||||||| |||||||||| ||| ||||| ||||| ||||||||  ||||| ||||||||||||    
T  17825727 tcatcaaaatcgtctgtggcttgaataatattctcatacaccattttgtcatcaaaactccatatgg 17825793  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 31058672 - 31058594
Alignment:
Q  244 gatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 322  Q
    ||||||||||||||||||   | || |||||||| ||||||||| | | |||||||||||||| |||||| ||||||||    
T  31058672 gatatttgtcatcaaaatttgcagtagcttcaataatattttcaaacatcatttttccatcatgactccaaatggaaaa 31058594  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 31103116 - 31103054
Alignment:
Q  244 gatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcat 306  Q
    |||||||||||||||||| ||| || |||||||||||||||||| | | |||||| |||||||    
T  31103116 gatatttgtcatcaaaattctcagtagcttcaatgatattttcaaacatcattttcccatcat 31103054  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 15664673 - 15664710
Alignment:
Q  54 tgtgaacaaaatccatataacttcacaatgttacgatg 91  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15664673 tgtgaacaaaatccatatagcttcacaatgttacgatg 15664710  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 31215886 - 31215834
Alignment:
Q  270 gcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 322  Q
    |||||||| ||||||||| | | |||||||||||||| |||||||||||||||    
T  31215886 gcttcaattatattttcaaacatcatttttccatcatgactccatatggaaaa 31215834  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 15676702 - 15676769
Alignment:
Q  249 ttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatat 316  Q
    ||||||||||| || | |||||||||||| || || ||||| |||||||| |||||| ||||||||||    
T  15676702 ttgtcatcaaactcttatgtggcttcaattatgttctcatacaccattttcccatcaaaactccatat 15676769  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 16173048 - 16172959
Alignment:
Q  244 gatatttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaaaatatcttgag 333  Q
    ||||||||||||||||||| | ||||||||| | ||| || || || ||||||||||||||  || ||||||| | ||||| || |||||    
T  16173048 gatatttgtcatcaaaatcttgtgtggcttccaagatgttctcgtagaccatttttccatcgaaattccatattgtaaaaacattttgag 16172959  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 14522256 - 14522317
Alignment:
Q  255 tcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatat 316  Q
    |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| | ||||||||    
T  14522256 tcaaaatcttctgtggcttcgatgatattctcatacaccatttttccatcaaagctccatat 14522317  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 14504462 - 14504395
Alignment:
Q  255 tcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 322  Q
    ||||| || ||||||||||| |  ||||||||||| ||||||||||||||| |||||||||| |||||    
T  14504462 tcaaactcttctgtggcttctacaatattttcatacaccatttttccatcaaaactccatattgaaaa 14504395  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 14468283 - 14468216
Alignment:
Q  255 tcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 322  Q
    ||||| || |||||||||||||  || |||||||| || |||||||||||| |||||||||| |||||    
T  14468283 tcaaactcttctgtggcttcaacaatgttttcatacacaatttttccatcaaaactccatattgaaaa 14468216  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 14522028 - 14522107
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgtttgatttgtgtcaa 106  Q
    |||||||||| ||| | |||  || ||||||||||||| ||||||||||| |||||||| ||||||  ||||| ||||||    
T  14522028 tcataaaccaaaaatgagtgtagtcgatgtgaacaaaacccatataactttacaatgttgcgatgtcggatttctgtcaa 14522107  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 15002815 - 15002750
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgt 92  Q
    |||||||||| ||| | |||  || ||||||||||||| || ||||||||||||||||| ||||||    
T  15002815 tcataaaccaaaaatgagtgtagtcgatgtgaacaaaagccgtataacttcacaatgttgcgatgt 15002750  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 15011708 - 15011643
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgt 92  Q
    |||||||||| ||| | |||  || ||||||||||||| || ||||||||||||||||| ||||||    
T  15011708 tcataaaccaaaaatgagtgtagtcgatgtgaacaaaagccgtataacttcacaatgttgcgatgt 15011643  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 15033160 - 15033095
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgt 92  Q
    |||||||||| ||| | |||  || ||||||||||||| || ||||||||||||||||| ||||||    
T  15033160 tcataaaccaaaaatgagtgtagtcgatgtgaacaaaacccgtataacttcacaatgttgcgatgt 15033095  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 15037727 - 15037662
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgt 92  Q
    |||||||||| ||| | |||  || ||||||||||||| ||||||||||| |||||||| ||||||    
T  15037727 tcataaaccaaaaacgagtgtagtcgatgtgaacaaaacccatataacttaacaatgttgcgatgt 15037662  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 15041295 - 15041230
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgt 92  Q
    |||||||||| ||| | |||  || ||||||||||||| ||||||||||| |||||||| ||||||    
T  15041295 tcataaaccaaaaatgagtgtagtcgatgtgaacaaaacccatataactttacaatgttgcgatgt 15041230  T

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Target: scaffold0289 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 5194 - 5261
Alignment:
Q  249 ttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatat 316  Q
    ||||||||||| || |||||||||||||| || || ||||| |||||||| |||||| ||||||||||    
T  5194 ttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattttcccatcaaaactccatat 5261  T

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Target: scaffold0289; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 14027 - 14094
Alignment:
Q  249 ttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatat 316  Q
    ||||||||||| || |||||||||||||| || || ||||| |||||||| |||||| ||||||||||    
T  14027 ttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattttcccatcaaaactccatat 14094  T

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Target: scaffold0400 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 13496 - 13431
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgt 92  Q
    |||||||||| ||| | |||  || ||||||||||||| || ||||||||||||||||| ||||||    
T  13496 tcataaaccaaaaatgagtgtagtcgatgtgaacaaaagccgtataacttcacaatgttgcgatgt 13431  T

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Target: scaffold0365 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 14139 - 14074
Alignment:
Q  27 tcataaaccacaaaagcgtggcgtggatgtgaacaaaatccatataacttcacaatgttacgatgt 92  Q
    |||||||||| ||| | |||  || ||||||||||||| || ||||||||||||||||| ||||||    
T  14139 tcataaaccaaaaatgagtgtagtcgatgtgaacaaaagccgtataacttcacaatgttgcgatgt 14074  T

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