View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_16 (Length: 401)
Name: NF5176_high_16
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 47494309 - 47494011
Alignment:
| Q |
1 |
ctctggctgcaaagatggaggagtgtaatgtgccagggctatcacagtttcaattggaagatgattattatgtctttgaaggaaaagtgattcaaaaaat |
100 |
Q |
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| T |
47494309 |
ctctggctgcaaagatggaggagtgtaatgtgccagagctatcacagtttcaattggaagatgattat---gtctttgaaggaaaagtgattcaaaaaat |
47494213 |
T |
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| Q |
101 |
ggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaaaaagttcagcaatgaatcacca |
200 |
Q |
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| T |
47494212 |
ggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaaaaagttcagcaatgaatcacca |
47494113 |
T |
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| Q |
201 |
agtcctattgtttccaacacaatgcatcctattttcactgtagtaatggaaggtgaatcaatcatgaactctctttttgagtttaaaagattatttacac |
300 |
Q |
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| T |
47494112 |
agtcctattatttccaacacaatgcatcctattttcactgtagtaatggaaggtgaatcaatcatgaactctctttttgagtttaaaagattatttacac |
47494013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 47493989 - 47493896
Alignment:
| Q |
301 |
taatgattaaactctaatattttttaataatcaaatgattatgttatattgatactagtagcatctaaatcttttgcattgatgatgatgatgt |
394 |
Q |
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| T |
47493989 |
taatgattaaactcaaatattttttaataatcaaatgattatgttatattgatactagtagcatctaaatcttttgcattgatgatgacgatgt |
47493896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 24221431 - 24221335
Alignment:
| Q |
82 |
gaaaagtgattcaaaaaatggagctttttgtacttagctcattggattggaacatgggtatcatcactcccttttcattcctttcttacttcatcaa |
178 |
Q |
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||||||| |||||||||||||||||||||| |||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
24221431 |
gaaaagtagttcaaaaaatggagctttttgttcttagcagattagattggaacatgagtattatcactcccttttcattcctttcttacttcatcaa |
24221335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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