View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_17 (Length: 400)
Name: NF5176_high_17
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_17 |
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| [»] scaffold1556 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 2053530 - 2053901
Alignment:
| Q |
11 |
cagagaggtgttggcatctgctatttaatgcgagggtttgaagatccaaccacggcggaagctatggtgctctataaatctgcgcaaatggcgatagatt |
110 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2053530 |
cagaaaggtgttggcatctgctacttaatgcgagggtttgaagatccaaccacggcggaagctatggtgctctataaatctgcgcaaatggcgatagatt |
2053629 |
T |
|
| Q |
111 |
gttgttttcgccgattgaatttgaaagtgataatgaagtgctcatcagaatgttgaatcacagggatatgggaactagaacttatattgggaatatagtc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2053630 |
gttgttttcgccgattgaatttgaaagtgataatgaagtgctcatcagaatgttgaatcacagggatttgggaactagaacttatattgggaatatagtc |
2053729 |
T |
|
| Q |
211 |
aaaggcatccgcgataaaactagaagttattccactcgcatagtttccttctttgtaaatgatttgatcaattaataaatctcaaatctgaattacaagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2053730 |
aaaggcatccgcgataaaactagaagttattccactcgcatagtttccttctatgtaaatgatttgatcaattaataaatctcaaatctgaattacaagt |
2053829 |
T |
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| Q |
311 |
aattcacaaccttcgttgcaagtctttcaacatcaaaacttcatacaaagcacagtcatactagaggcaatt |
382 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2053830 |
aattcacaacattcgttgcaagtctttcaacatcaaaacttcatacaaagcacagtcatactagaggcaatt |
2053901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 2063339 - 2063637
Alignment:
| Q |
11 |
cagagaggtgttggcatctgctatttaatgcgagggtttgaagatccaaccacggcggaagctatggtgctctataaatctgcgcaaatggcgatagatt |
110 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2063339 |
cagaaaggtgttggcatctgctacttaatgcgagggtttgaagatccaaccacggcgaaagctatggtgctctataaatcttcgcaaatggcgatagatt |
2063438 |
T |
|
| Q |
111 |
gttgttttcgccgattgaatttgaaagtgataatgaagtgctcatcagaatgttgaatcacagggatatgggaactagaacttatattgggaatatagtc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2063439 |
gttgttttcgccgattgaatttgaaagtgataatgaagtgctcatcagaatgttgaatcacagggatttgggaactagaacttatattgggaatatagtc |
2063538 |
T |
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| Q |
211 |
aaaggcatccgcgataaaactagaagttattccactcgcatagtttccttctttgtaaatgatttgatcaattaataaatctcaaatctgaattacaag |
309 |
Q |
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| T |
2063539 |
aaaggcatctgcgataaaactagaagttattccactcgcatagtttccttctttgtaaatgatttgatcaattaataaatctcaaatctgaattacaag |
2063637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 2069898 - 2070136
Alignment:
| Q |
11 |
cagagaggtgttggcatctgctattt----aatgcgagggtttgaagatccaaccacggcggaagctatggtgctctataaatctgcgcaaatgg-cgat |
105 |
Q |
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||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
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| T |
2069898 |
cagagaggtgttggcatctgctacctggagaatgcgagagtttgaagatccaaccatggcggaagctatggtgctctataaatctgcgcaaatgggctat |
2069997 |
T |
|
| Q |
106 |
agattgttgttttcgccga-ttgaatttgaaagtgataatgaagtgctcatcagaatgttgaatcacagggatatgggaactagaacttatattgggaat |
204 |
Q |
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||||||| |||| ||| || ||||||||||||| ||||||||| |||||||| ||||||||||| || |||| ||||||||||| ||||| |||||||| |
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| T |
2069998 |
agattgtagttt-cgctgagttgaatttgaaagcgataatgaaacgctcatcaaaatgttgaatcgcaaggatttgggaactagagcttatcttgggaat |
2070096 |
T |
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| Q |
205 |
atagtcaaaggcatccgcgataaaactagaagttattcca |
244 |
Q |
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|| ||||||||||||| ||||||||||||||||||||||| |
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| T |
2070097 |
attgtcaaaggcatccacgataaaactagaagttattcca |
2070136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 2248074 - 2247985
Alignment:
| Q |
293 |
caaatctgaattacaagtaattcacaaccttcgttgcaagtctttcaacatcaaaacttcatacaaagcacagtcatactagaggcaatt |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||| ||||| |
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| T |
2248074 |
caaatctgaattacaagtaattcacaaccttcgttgcaagtctttcaacaataaaacttcatacaaagcacattcacacaagagacaatt |
2247985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 382
Target Start/End: Original strand, 2070736 - 2070825
Alignment:
| Q |
293 |
caaatctgaattacaagtaattcacaaccttcgttgcaagtctttcaacatcaaaacttcatacaaagcacagtcatactagaggcaatt |
382 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |||| ||||||||||||||||| |
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| T |
2070736 |
caaatctgaattataagtaattcacaaccttcgttgcttgtctttcaacaacaaaacatcatacaaatcacattcatactagaggcaatt |
2070825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 2070156 - 2070221
Alignment:
| Q |
233 |
gaagttattccac-tcgcatagtttccttctttgtaaatgatttgatcaattaataaatctcaaat |
297 |
Q |
| |
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||||||||||||| | |||| ||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
2070156 |
gaagttattccacctagcattgtttccttcattgtaaatgattagatcaattaatcaatctcaaat |
2070221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1556 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold1556
Description:
Target: scaffold1556; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 1159 - 1457
Alignment:
| Q |
11 |
cagagaggtgttggcatctgctatttaatgcgagggtttgaagatccaaccacggcggaagctatggtgctctataaatctgcgcaaatggcgatagatt |
110 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1159 |
cagaaaggtgttggcatctgctacttaatgcgagggtttgaagatccaaccacggcgaaagctatggtgctctataaatctgcgcaaatggcgatagatt |
1258 |
T |
|
| Q |
111 |
gttgttttcgccgattgaatttgaaagtgataatgaagtgctcatcagaatgttgaatcacagggatatgggaactagaacttatattgggaatatagtc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1259 |
gttgttttcgccgattgaatttgaaagtgataatgaagtgctcatcagaatgttgaatcacagggatttgggaactagaacttatattgggaatatagtc |
1358 |
T |
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| Q |
211 |
aaaggcatccgcgataaaactagaagttattccactcgcatagtttccttctttgtaaatgatttgatcaattaataaatctcaaatctgaattacaag |
309 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1359 |
aaaggcatcagcgataaaactagaagttattccactcgcatagtttccttctttgtaaatgatttgatcaattaataaatctcaaatctgaattacaag |
1457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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