View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_high_18 (Length: 395)

Name: NF5176_high_18
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_high_18
NF5176_high_18
[»] chr3 (3 HSPs)
chr3 (173-379)||(30542013-30542210)
chr3 (74-157)||(30541939-30542022)
chr3 (9-76)||(30541612-30541679)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 173 - 379
Target Start/End: Original strand, 30542013 - 30542210
Alignment:
Q  173 aaaaatcacttcaaactattacatgataatgaattcattatttcatttcatattcaaccaaactctaacgtacgtacatagatgtcataaatttgcatta 272  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30542013 aaaaatcacttcaaactattacatgataatgaattca--------tttcatattcaaccaaactctaacgtacgtacatagatgtcataaatttgcatta 30542104  T
Q  273 gaatcattatatatattgattgacatgcatagggtcgatcaagaaaggccactagcgtagttatatcgtcaactaagactaaatatatataattttgacc 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30542105 gaatcattatatatattgattgacatgcatagggtcgatcaagaaaggccactagcgtagttatatcgtcaactaagactaaata-gtataattttgacc 30542203  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 30541939 - 30542022
Alignment:
Q  74 ttgttcaaaatcctggaaatatagttaaaaagtggtcccctccaagtaaattttgcaccaacagctcccatataaaaaatcact 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30541939 ttgttcaaaatcctggaaatatagttaaaaagtggtcccctccaagtaaattttgcaccaacagctcccatgtaaaaaatcact 30542022  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 30541612 - 30541679
Alignment:
Q  9 gagatgaatcattagtagaattctaatcatggaaagagaactttaacccttcatgatttaatgcattg 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30541612 gagatgaatcattagtagaattctaatcatggaaagagaactttaacccttcatgatttaatgcattg 30541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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