View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_19 (Length: 374)
Name: NF5176_high_19
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 24242191 - 24241851
Alignment:
| Q |
15 |
acctggtacatgtacttcacctttttacaaatggaaaatgctacttttcatgaaaattcttttcacgacaacatcccgatggtacaattttaatatcttt |
114 |
Q |
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| T |
24242191 |
acctggtacaagtacttcacctttttacaaatggaaaatgctacttatcatgaaaattcttttcacgacaacatcccgatggtacaattttaatatcttt |
24242092 |
T |
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| Q |
115 |
ctaaaccattttatttccaaccacccatgtattttaattaaaggcctagatcaaacggttcaaaatcattcgcgatgttctcggcatgttttctttcgcg |
214 |
Q |
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| T |
24242091 |
ctacaccattttatttccaaccacccatgtattttaattaaaggcctagatcaaacggttcaaaatcattcgcgatgttctcggcatgttttctttcgcg |
24241992 |
T |
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| Q |
215 |
atcaatagcactactgtttacaaatgcacatacttcaatatggtatctcaagtgtcttcatatcaaatctttttctagaaagaagaaatgtctccaaatc |
314 |
Q |
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| T |
24241991 |
atcaatagcattactgtttacaaatacacatacttcaatatggtatctcaagtgtctccatatcaaatctttttctagaaagaagaaatgtctccaaatc |
24241892 |
T |
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| Q |
315 |
aggtaagcaacactcccacatgaaatttggatctggtctct |
355 |
Q |
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| T |
24241891 |
aggtaagcaacactcccacatgaaatttggatctggtctct |
24241851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 3855443 - 3855627
Alignment:
| Q |
47 |
ggaaaatgctacttttcatgaaaattcttttcacgacaacatcccgatgg-------tacaattttaatatctttctaaaccattttatttccaaccacc |
139 |
Q |
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| T |
3855443 |
ggaaaatgctatttatcacaagaattcctttcacgacaacatcccgatggacgacggtaaaattttaatatctttctacatcattttatttcaaaccacc |
3855542 |
T |
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| Q |
140 |
catgtattttaattaaaggcctagatcaaacggttcaaaatcattcgcgatgttctcggcatgttttctttcgcgatcaatagca |
224 |
Q |
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| T |
3855543 |
catgtattgtaattaaaggtctagatcaaacggttcaaaatcattcgcgatgttcttggcatgttttctttcgcgatcaatagca |
3855627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 47915811 - 47915666
Alignment:
| Q |
69 |
aattcttttcacgacaacatcccgatggtacaattttaatatctttctaaaccattttatttccaaccacccatgtattttaattaaaggcctagatcaa |
168 |
Q |
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| T |
47915811 |
aattcttttcacgagaacatccggatcgtacaattttaatatatttctacaccactttatttccaactacccatg---------taaaggcctagatcta |
47915721 |
T |
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| Q |
169 |
acggttcaaaatcattcgcgatgttctcggcatgttttctttcgcgatcaatagca |
224 |
Q |
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| T |
47915720 |
acggttcagaatcattc-agatgttctcgacatgttttctttcgcggtcaatagca |
47915666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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