View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_28 (Length: 311)
Name: NF5176_high_28
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 46464206 - 46463917
Alignment:
| Q |
1 |
ttaattcggtcgtacacggnnnnnnnaaccatatcgatccttcactaaaaatttaattcagtcgtatacggnnnnnnnnaaccatatcggtccttcagaa |
100 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
46464206 |
ttaattcggtcgtacacggtttttttaaccatatcggtccttcactaaaaatttaattcagtcgtatacggttttttttaaccatatcgatccttcagaa |
46464107 |
T |
|
| Q |
101 |
agacaacttagcccttaagtcataaaaatgtcataaactaatttannnnnnnnacatacattgaattggaccgtgaaaaaattgcgagctcgagttttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46464106 |
agacaacttagcccttaagtcataaaaatgtcataaactaatttactttttt-acatacattgaattgaaccgtgaaaaaattgcgagctcgagttttga |
46464008 |
T |
|
| Q |
201 |
gtggtctataaataaattggggtctttactagtttattttcagtttgagcaatatcattgttttgcttacattactacactttgtagcgggaaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46464007 |
gtggtctataaataaattggggtctttactagtttattttcagtttgagcaatatcattgttttgcttacat---tacactttgtagcgggaaa |
46463917 |
T |
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