View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_high_30 (Length: 302)

Name: NF5176_high_30
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_high_30
NF5176_high_30
[»] chr6 (15 HSPs)
chr6 (49-182)||(5283660-5283793)
chr6 (49-182)||(5256596-5256729)
chr6 (187-300)||(5283499-5283612)
chr6 (202-300)||(5101105-5101203)
chr6 (202-300)||(5136206-5136304)
chr6 (244-300)||(5448561-5448617)
chr6 (94-161)||(5181244-5181311)
chr6 (238-300)||(5256437-5256499)
chr6 (202-300)||(5426810-5426908)
chr6 (92-161)||(5101271-5101340)
chr6 (92-161)||(5136372-5136441)
chr6 (202-279)||(5351310-5351387)
chr6 (249-300)||(5438968-5439019)
chr6 (250-300)||(5181061-5181111)
chr6 (3-39)||(5257106-5257142)
[»] chr3 (4 HSPs)
chr3 (246-292)||(47985688-47985734)
chr3 (246-292)||(47994975-47995021)
chr3 (246-292)||(48004262-48004308)
chr3 (246-292)||(48013547-48013593)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 5283793 - 5283660
Alignment:
Q  49 caaattttgttatcagtcattgttactattagtatcttccatcactgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatga 148  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   |||||||||||    
T  5283793 caaattttgttatcagtcattgttattattagtatcttccatcactgatagtctgttttatgaatccaagcaaatatttatttgtaacatcaaaatatga 5283694  T
Q  149 ttaactaccttataagggaagttatatcttcaat 182  Q
    ||||||||||||||||||||||||||||||||||    
T  5283693 ttaactaccttataagggaagttatatcttcaat 5283660  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 5256729 - 5256596
Alignment:
Q  49 caaattttgttatcagtcattgttactattagtatcttccatcactgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatga 148  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  | ||||||||||    
T  5256729 caaattttgttatcagccattgttactattagtatcttccatcactgatagtctgttttatgaatccaagaaaatctttatttgtaacgccaaaatatga 5256630  T
Q  149 ttaactaccttataagggaagttatatcttcaat 182  Q
    ||||||||||||||||||||||||||| ||||||    
T  5256629 ttaactaccttataagggaagttatatattcaat 5256596  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 5283612 - 5283499
Alignment:
Q  187 ttgagcataccttacttttgcagaatatggatgtcaatagtggtggtgtggatttgattcctggtgatagttatccagattggttgacctttaggtctga 286  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||    |||| ||||||||||||||||||||||||||||||||||||| || ||    
T  5283612 ttgagcataccttacttttacagaatatggatgtcaataggagtggtgattgtttgcttcctggtgatagttatccagattggttgacctttagttcaga 5283513  T
Q  287 aggttcgtctgtaa 300  Q
    |||||| |||||||    
T  5283512 aggttcttctgtaa 5283499  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 5101203 - 5101105
Alignment:
Q  202 ttttgcagaatatggatgtcaatagtggtggtgtggatttgattcctggtgatagttatccagattggttgacctttaggtctgaaggttcgtctgtaa 300  Q
    ||||||||||||| |||||||||||| ||||||    |||| |||||||||||||||||||| ||||||| ||||||   || |||||||| |||||||    
T  5101203 ttttgcagaatatagatgtcaatagtagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaa 5101105  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 5136304 - 5136206
Alignment:
Q  202 ttttgcagaatatggatgtcaatagtggtggtgtggatttgattcctggtgatagttatccagattggttgacctttaggtctgaaggttcgtctgtaa 300  Q
    ||||||||||||| |||||||||||  ||||||    |||| |||||||||||||||||||| ||||||| ||||||   || |||||||| |||||||    
T  5136304 ttttgcagaatatagatgtcaatagaagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaa 5136206  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 5448561 - 5448617
Alignment:
Q  244 ttcctggtgatagttatccagattggttgacctttaggtctgaaggttcgtctgtaa 300  Q
    |||| ||||||||||||||||||||||| |||||||  ||||||||||| |||||||    
T  5448561 ttcccggtgatagttatccagattggttaacctttaattctgaaggttcttctgtaa 5448617  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 5181311 - 5181244
Alignment:
Q  94 tgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatgattaactaccttat 161  Q
    |||||||||||| ||||||||||||||||  ||| ||||||  |||||||||||||||| | ||||||    
T  5181311 tgatagtctgttttatgaatccaagcaaagatttctttgtaacgtcaaaatatgattaattgccttat 5181244  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 5256499 - 5256437
Alignment:
Q  238 atttgattcctggtgatagttatccagattggttgacctttaggtctgaaggttcgtctgtaa 300  Q
    ||||| |||||||||||||| ||||| ||||||| |||| ||| ||||||||||| |||||||    
T  5256499 atttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaa 5256437  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 5426810 - 5426908
Alignment:
Q  202 ttttgcagaatatggatgtcaatagtggtggtgtggatttgattcctggtgatagttatccagattggttgacctttaggtctgaaggttcgtctgtaa 300  Q
    ||||||||||||||||| |||||||  |||||     |||| |||||||||| ||||||||| | ||||| |||| ||| ||||||||||| |||||||    
T  5426810 ttttgcagaatatggatctcaataggagtggtagttttttgcttcctggtgacagttatccaaagtggttaacctatagttctgaaggttcttctgtaa 5426908  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 5101340 - 5101271
Alignment:
Q  92 actgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatgattaactaccttat 161  Q
    |||||||||  ||| ||||||||||||||||| ||| | ||||  |||||||||||||||| ||||||||    
T  5101340 actgatagttggttttatgaatccaagcaaatatttctctgtaacgtcaaaatatgattaattaccttat 5101271  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 5136441 - 5136372
Alignment:
Q  92 actgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatgattaactaccttat 161  Q
    |||||||||  ||| ||||||||||||||||| ||| | ||||  |||||||||||||||| ||||||||    
T  5136441 actgatagttggttttatgaatccaagcaaatatttctctgtaacgtcaaaatatgattaattaccttat 5136372  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 5351310 - 5351387
Alignment:
Q  202 ttttgcagaatatggatgtcaatagtggtggtgtggatttgattcctggtgatagttatccagattggttgaccttta 279  Q
    ||||||||||||||||| |||||||  || |||    |||| |||||||||||||||||||| ||||||| |||||||    
T  5351310 ttttgcagaatatggatctcaataggagtagtggttgtttgcttcctggtgatagttatccaaattggttaaccttta 5351387  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 5438968 - 5439019
Alignment:
Q  249 ggtgatagttatccagattggttgacctttaggtctgaaggttcgtctgtaa 300  Q
    ||||||||||||||| ||||||| |||||||  ||||||||||| |||||||    
T  5438968 ggtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaa 5439019  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 5181111 - 5181061
Alignment:
Q  250 gtgatagttatccagattggttgacctttaggtctgaaggttcgtctgtaa 300  Q
    |||||||||||||| ||||||| |||||||  ||||||||||| |||||||    
T  5181111 gtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaa 5181061  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 5257142 - 5257106
Alignment:
Q  3 agtaatagaatacatgaacttccatccttttcgaacc 39  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  5257142 agtaatagaatacatgaactttcatctttttcgaacc 5257106  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 47985734 - 47985688
Alignment:
Q  246 cctggtgatagttatccagattggttgacctttaggtctgaaggttc 292  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||    
T  47985734 cctggtgatagttatccaaattggttaacctttaattctgaaggttc 47985688  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 47995021 - 47994975
Alignment:
Q  246 cctggtgatagttatccagattggttgacctttaggtctgaaggttc 292  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||    
T  47995021 cctggtgatagttatccaaattggttaacctttaattctgaaggttc 47994975  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 48004308 - 48004262
Alignment:
Q  246 cctggtgatagttatccagattggttgacctttaggtctgaaggttc 292  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||    
T  48004308 cctggtgatagttatccaaattggttaacctttaattctgaaggttc 48004262  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 48013593 - 48013547
Alignment:
Q  246 cctggtgatagttatccagattggttgacctttaggtctgaaggttc 292  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||    
T  48013593 cctggtgatagttatccaaattggttaacctttaattctgaaggttc 48013547  T

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