View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_high_33 (Length: 289)

Name: NF5176_high_33
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_high_33
NF5176_high_33
[»] chr6 (18 HSPs)
chr6 (31-280)||(31500099-31500348)
chr6 (31-280)||(31494713-31494962)
chr6 (31-262)||(31473509-31473740)
chr6 (1-279)||(31514596-31514853)
chr6 (104-267)||(14745261-14745424)
chr6 (104-280)||(7848041-7848217)
chr6 (121-280)||(22396670-22396829)
chr6 (76-153)||(14745338-14745415)
chr6 (141-240)||(10907232-10907332)
chr6 (146-241)||(8404235-8404331)
chr6 (146-267)||(21038167-21038288)
chr6 (84-167)||(7848117-7848200)
chr6 (146-267)||(21083788-21083908)
chr6 (211-265)||(27122148-27122202)
chr6 (104-266)||(9190594-9190756)
chr6 (91-167)||(22396677-22396753)
chr6 (223-266)||(19548079-19548122)
chr6 (182-241)||(10641811-10641870)
[»] chr4 (10 HSPs)
chr4 (76-280)||(6821016-6821220)
chr4 (146-267)||(15873344-15873465)
chr4 (220-280)||(17418269-17418329)
chr4 (220-280)||(3576630-3576690)
chr4 (220-280)||(19728784-19728844)
chr4 (104-203)||(6821130-6821229)
chr4 (182-241)||(16285528-16285587)
chr4 (223-266)||(18557654-18557697)
chr4 (182-239)||(11555579-11555636)
chr4 (146-216)||(9563987-9564058)
[»] chr2 (12 HSPs)
chr2 (141-280)||(35922692-35922831)
chr2 (145-244)||(13361399-13361500)
chr2 (182-241)||(44586894-44586953)
chr2 (222-280)||(22521377-22521435)
chr2 (220-280)||(23247574-23247635)
chr2 (220-280)||(23907432-23907492)
chr2 (141-241)||(32252530-32252633)
chr2 (178-266)||(16858360-16858447)
chr2 (76-156)||(35922663-35922744)
chr2 (146-241)||(23656830-23656926)
chr2 (146-231)||(24724912-24724998)
chr2 (221-266)||(18988136-18988180)
[»] chr7 (6 HSPs)
chr7 (205-280)||(3089569-3089644)
chr7 (220-281)||(16074830-16074891)
chr7 (146-241)||(4532170-4532266)
chr7 (182-241)||(11655090-11655149)
chr7 (182-241)||(13477928-13477987)
chr7 (145-238)||(37946273-37946368)
[»] scaffold0061 (1 HSPs)
scaffold0061 (220-280)||(18453-18513)
[»] chr3 (5 HSPs)
chr3 (146-267)||(21974783-21974904)
chr3 (146-267)||(21997214-21997335)
chr3 (146-241)||(13929182-13929278)
chr3 (146-241)||(16363042-16363136)
chr3 (149-241)||(22159383-22159475)
[»] scaffold1043 (1 HSPs)
scaffold1043 (220-280)||(1764-1824)
[»] chr8 (1 HSPs)
chr8 (220-280)||(17862583-17862643)
[»] scaffold1001 (1 HSPs)
scaffold1001 (192-241)||(1005-1054)
[»] scaffold0385 (1 HSPs)
scaffold0385 (146-267)||(13773-13892)
[»] scaffold0010 (1 HSPs)
scaffold0010 (220-280)||(141902-141962)
[»] scaffold0094 (1 HSPs)
scaffold0094 (220-266)||(5426-5472)
[»] scaffold0170 (1 HSPs)
scaffold0170 (220-280)||(16894-16954)
[»] scaffold0057 (1 HSPs)
scaffold0057 (141-241)||(40696-40797)
[»] chr5 (6 HSPs)
chr5 (177-247)||(13935351-13935423)
chr5 (182-266)||(24614936-24615019)
chr5 (182-266)||(24711334-24711417)
chr5 (182-266)||(24744330-24744413)
chr5 (182-266)||(24757096-24757179)
chr5 (220-280)||(19019444-19019504)
[»] scaffold0145 (1 HSPs)
scaffold0145 (182-241)||(12129-12188)
[»] scaffold0092 (1 HSPs)
scaffold0092 (195-267)||(20110-20181)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 31500099 - 31500348
Alignment:
Q  31 catgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctgg 130  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31500099 catgcgtacattggagtgtattttgtggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcagtaaaatatttctgg 31500198  T
Q  131 caaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtacca 230  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  31500199 caactatgttgagaaaagtccagtaacatatctctggcaaccatgttgagaaaagtccaataatataactctggcaaaatgatgagtaagtgtggtacca 31500298  T
Q  231 cattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31500299 cattcatatagatcttaggactgagtccatatgcatacaaattcatgatg 31500348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 31494713 - 31494962
Alignment:
Q  31 catgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctgg 130  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  31494713 catgcgtacattggagtgtattttgtggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcagtaaaatatctctgg 31494812  T
Q  131 caaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtacca 230  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  31494813 caaccatgttgagaaaagtccagtaacatatctctggcaaccatgttgagaaaaatccaataatataactctggcaaaatgatgagtaagtgtggtacca 31494912  T
Q  231 cattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31494913 cattcatatagatcttaggactgagtccatatgcatacaaattcatgatg 31494962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 31473509 - 31473740
Alignment:
Q  31 catgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctgg 130  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31473509 catgcgtacattggagtgtattttgtggtggtttatttgatgccactagtaagatacttttggcaactatgttgagaaaagttcattaaaatatttctgg 31473608  T
Q  131 caaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtacca 230  Q
    || ||||||||||||||||| |||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  31473609 cacccatgttgagaaaagtctagtaacatatctctggcaaccatgttgagaaaagtccagtaatataactctggcaaaatgatgagtaagtgtggtacca 31473708  T
Q  231 cattcatatagatcttaggactgagtccatat 262  Q
    ||||||||||| ||||||||||||||||||||    
T  31473709 cattcatataggtcttaggactgagtccatat 31473740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 31514596 - 31514853
Alignment:
Q  1 tgtacaagactccatgcgttgatgcatgtgcatgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagatacttttggcaactat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31514596 tgtacaagactccatgcgttgatgcatgtgcatgcgtacattggagtgtattttgtggtggtttatttgatgccaccagtaagatacttttggcaactat 31514695  T
Q  101 gttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataact 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |||||||||||||    
T  31514696 gttgagaaaagttcagtaaaatatttctggcaaccatgttgagaaaagtccagtaatatatctctggcaatcatgttgagaaaagtccaataatataact 31514795  T
Q  201 ctgacaaaatgatgagtaagtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgat 279  Q
    |                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31514796 c---------------------tggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgat 31514853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 104 - 267
Target Start/End: Complemental strand, 14745424 - 14745261
Alignment:
Q  104 gagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctg 203  Q
    ||||||||| || ||| ||| |||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||| ||  |||| |||||||    
T  14745424 gagaaaagtccagtaatatacttctggcaactatgttgagaaaagttcagtaacatatctctgacaaccatgttgagaaaagtccagcaataaaactctg 14745325  T
Q  204 acaaaatgatgagtaagtgtggtaccacattcatatagatcttaggactgagtccatatgcata 267  Q
     |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  14745324 gcaaaatgatgagtaggtgtggtaccacattcatataggtcttaggactgagtccatatgcata 14745261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 280
Target Start/End: Complemental strand, 7848217 - 7848041
Alignment:
Q  104 gagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctg 203  Q
    |||||||||||| ||| ||| |||||||||| ||||||||||||||||  |||||||||||| | ||| |||||||||||||| || |||||||||||||    
T  7848217 gagaaaagttcactaacatacttctggcaactatgttgagaaaagtcctataacatatctctagcaactatgttgagaaaagtccactaatataactctg 7848118  T
Q  204 acaaaatgatgagtaagtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
     ||||| |||||||| |||||||||||||||||||||| |||||||| |||||  ||||||||| ||||||||||||    
T  7848117 gcaaaacgatgagtaggtgtggtaccacattcatataggtcttaggattgagtttatatgcataaaaattgatgatg 7848041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 22396670 - 22396829
Alignment:
Q  121 atatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaag 220  Q
    |||| ||||||||  ||||||| |||| ||||||||||||||||||| ||||||||||||||||||  | ||||||||||||| |||||||||||||| |    
T  22396670 atatctctggcaattatgttgaaaaaattccagtaacatatctctggcaaccatgttgagaaaagtctagtaatataactctggcaaaatgatgagtagg 22396769  T
Q  221 tgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||    
T  22396770 tgtggtaccacattcatataggtcttaggactaagtccatatgcataaaatttgacgatg 22396829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 14745415 - 14745338
Alignment:
Q  76 ccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccag 153  Q
    ||||||| |||||| ||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||    
T  14745415 ccagtaatatacttctggcaactatgttgagaaaagttcagtaacatatctctgacaaccatgttgagaaaagtccag 14745338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 10907232 - 10907332
Alignment:
Q  141 gagaaaagtccagtaacatatctctggtaaccatgttg-agaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatat 239  Q
    ||||||||||||||||||||  ||||| ||| |||| | |||||||| || ||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  10907232 gagaaaagtccagtaacatacttctggcaactatgtgggagaaaagtccattaatataactctggcaaaatgacgagtaggtgtggtaccacattcatat 10907331  T
Q  240 a 240  Q
    |    
T  10907332 a 10907332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 8404235 - 8404331
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | ||||||||||| ||||||||    
T  8404235 aagtccagtaacatatctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagtggtaccacaatcatatag 8404331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 21038167 - 21038288
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc 244  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||||| ||| ||||||| |||||||| ||    
T  21038167 aagtccagtaacatacctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaagagtgataccacaatcatataggtc 21038266  T
Q  245 -ttaggactgagtccatatgcata 267  Q
     ||||||  |||||||||||||||    
T  21038267 gttagga--gagtccatatgcata 21038288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 7848200 - 7848117
Alignment:
Q  84 atacttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctgg 167  Q
    |||||| |||||||||||||||||||||| | |||| |||| ||| ||||| ||||||||||||||||| ||| ||| ||||||    
T  7848200 atacttctggcaactatgttgagaaaagtcctataacatatctctagcaactatgttgagaaaagtccactaatataactctgg 7848117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 21083788 - 21083908
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc 244  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || |||  ||| |||| |||||||||||||||| ||||||||||| |||||||| ||    
T  21083788 aagtccagtaacatacctctggcaaactatgatgagaaaagtccagtaac-taattctggcaaaatgatgagtaagagtggtaccacaatcatataggtc 21083886  T
Q  245 -ttaggactgagtccatatgcata 267  Q
     ||||||  |||||||||||||||    
T  21083887 gttagga--gagtccatatgcata 21083908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 27122148 - 27122202
Alignment:
Q  211 gatgagtaagtgtggtaccacattcatatagatcttaggactgagtccatatgca 265  Q
    |||||||| || ||||||||||||||||||| |||||||||||||| ||||||||    
T  27122148 gatgagtaggtatggtaccacattcatataggtcttaggactgagttcatatgca 27122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 266
Target Start/End: Complemental strand, 9190756 - 9190594
Alignment:
Q  104 gagaaaagttcaataaaatatttctggcaaccatgttg-agaaaagtccagtaacatatctctggtaaccatgttg-agaaaagttcaataatataactc 201  Q
    |||||||||||| ||| ||| |||||||||  |||| | ||| ||||||||||||||| ||||   ||| |||| | |||||||| || ||||||||||     
T  9190756 gagaaaagttcactaacatacttctggcaattatgtgggagagaagtccagtaacatacctctaacaactatgtgggagaaaagtccactaatataactt 9190657  T
Q  202 tgacaaaatgatgagtaagtgtggtaccacattcatatagatcttaggactgagtccatatgcat 266  Q
    ||  |||||  ||||||  | ||||||||||||||||||| || |||||  ||||||||||||||    
T  9190656 tggaaaaattgtgagtagctatggtaccacattcatataggtcatagga--gagtccatatgcat 9190594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 22396677 - 22396753
Alignment:
Q  91 tggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctgg 167  Q
    |||||| |||||||| |||| | || ||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||    
T  22396677 tggcaattatgttgaaaaaattccagtaacatatctctggcaaccatgttgagaaaagtctagtaatataactctgg 22396753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 19548079 - 19548122
Alignment:
Q  223 tggtaccacattcatatagatcttaggactgagtccatatgcat 266  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  19548079 tggtaccacattcatataggtcttaggaatgagtccatatgcat 19548122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 10641811 - 10641870
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    |||||||| ||| |||||||||  |||||||  |||| ||||||||||||||||||||||    
T  10641811 aaagttcagtaacataactctggaaaaatgacaagtaggtgtggtaccacattcatatag 10641870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 76 - 280
Target Start/End: Complemental strand, 6821220 - 6821016
Alignment:
Q  76 ccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatg 175  Q
    ||||||| |||||| || ||||||||||||||||||| || ||| ||| ||||| |||| |||||||||||||||||||||||||||||||| ||| |||    
T  6821220 ccagtaacatacttctgacaactatgttgagaaaagtccagtaacatacttctgacaactatgttgagaaaagtccagtaacatatctctggcaactatg 6821121  T
Q  176 ttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattga 275  Q
    ||||||||||| || ||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||||| |||||  ||||||||| |||||||    
T  6821120 ttgagaaaagtccagtaatataactctggcaaaacgatgagtaggtgtggtaccacattcatataggtcttaggattgagtaaatatgcataaaaattga 6821021  T
Q  276 tgatg 280  Q
    |||||    
T  6821020 tgatg 6821016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 15873344 - 15873465
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc 244  Q
    |||||||||||||||||||||  || | ||| |||||||||| || ||| ||||||||| | |||||||||||| | ||||||||||| |||||||| ||    
T  15873344 aagtccagtaacatatctctgacaaactatgatgagaaaagtccagtaacataactctggctaaatgatgagtaggagtggtaccacaatcatataggtc 15873443  T
Q  245 -ttaggactgagtccatatgcata 267  Q
     ||||||  |||||||||||||||    
T  15873444 gttagga--gagtccatatgcata 15873465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 17418329 - 17418269
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||    
T  17418329 gtgtggtaccacattcatataggtcttaggactgagtccatatgcataaaatttgacgatg 17418269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 3576630 - 3576690
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| |||||| |||  ||||||||||||| || |||||||||    
T  3576630 gtgtggtaccacattcatataggtcttagtactacgtccatatgcataaaatttgatgatg 3576690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 19728784 - 19728844
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| |||||||| |||||||| ||||||| || |||| ||||    
T  19728784 gtgtggtaccacattcatataggtcttaggattgagtccacatgcataaaatttgacgatg 19728844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 6821229 - 6821130
Alignment:
Q  104 gagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctg 203  Q
    ||||||| | || ||| ||| ||||| |||| |||||||||||||||||||||||||  ||||  ||| |||||||||||||| || ||| ||| |||||    
T  6821229 gagaaaattccagtaacatacttctgacaactatgttgagaaaagtccagtaacatacttctgacaactatgttgagaaaagtccagtaacatatctctg 6821130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 16285528 - 16285587
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||| || ||| ||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  16285528 aaagtccagtaacataactctggcaaaatgacgagtaggtgtggtaccacattcatatag 16285587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 18557654 - 18557697
Alignment:
Q  223 tggtaccacattcatatagatcttaggactgagtccatatgcat 266  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  18557654 tggtaccacattcatataggtcttaggaatgagtccatatgcat 18557697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 11555636 - 11555579
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatat 239  Q
    ||||| || ||| ||||||||| |||||||||||||| |||||||||| |||||||||    
T  11555636 aaagtccagtaacataactctggcaaaatgatgagtaggtgtggtaccgcattcatat 11555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 9564058 - 9563987
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgag 216  Q
    |||| ||||||||||||||||| || | |||  |||||||||||| ||| ||||||||||||||||| ||||    
T  9564058 aagtacagtaacatatctctggcaaactatgacgagaaaagttcagtaacataactctgacaaaatgttgag 9563987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 35922692 - 35922831
Alignment:
Q  141 gagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatata 240  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| || ||||| ||||||| ||||| ||||||||  ||||||||||||||||||||    
T  35922692 gagaaaagtccagtaacatatctctggcaactatgttgagaaaagtccagtaataaaactctggcaaaacgatgagtagatgtggtaccacattcatata 35922791  T
Q  241 gatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    | ||||||||||||||||||||||||| ||||||||||||    
T  35922792 ggtcttaggactgagtccatatgcataaaaattgatgatg 35922831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 13361500 - 13361399
Alignment:
Q  145 aaagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaat-gatgagtaagtgtggtaccacattcatataga 242  Q
    |||||||||||||||| |||||| || | |||| ||||||||| || ||| ||||||||| |||||| || ||||| |||||||||||||||||||||||    
T  13361500 aaagtccagtaacatacctctggcaaactatgtagagaaaagtccagtaacataactctggcaaaattgaagagtaggtgtggtaccacattcatataga 13361401  T
Q  243 tc 244  Q
    ||    
T  13361400 tc 13361399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 44586894 - 44586953
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||| || ||| ||||||||| |||||||||||||| ||||||||||||||||||||||    
T  44586894 aaagtccagtaacataactctggcaaaatgatgagtaggtgtggtaccacattcatatag 44586953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 22521435 - 22521377
Alignment:
Q  222 gtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    ||||||||||||||||| || |||||||||||||||||||| |||| ||||| ||||||    
T  22521435 gtggtaccacattcataaaggtcttaggactgagtccatatccataaaaattaatgatg 22521377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 23247574 - 23247635
Alignment:
Q  220 gtgtggtaccacattcatatagatcttagg-actgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||||| || |||||||||    
T  23247574 gtgtggtaccacattcatataggtcttaggaattgagtccatatgcataaaatttgatgatg 23247635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 23907492 - 23907432
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||| || |||| ||||    
T  23907492 gtgtggtactacattcatataggtcttaggaatgagtccatatgcataaaatttgacgatg 23907432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 32252530 - 32252633
Alignment:
Q  141 gagaaaagtccagtaacatat--ctctggtaaccatgttg-agaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcat 237  Q
    ||||||||||||||||||||   |||| | ||| |||| | |||||||| || |||||||||||||  |||||| |||||| |||||||||||||| |||    
T  32252530 gagaaaagtccagtaacatacacctctcgaaactatgtgggagaaaagtccagtaatataactctgcaaaaatggtgagtaggtgtggtaccacatacat 32252629  T
Q  238 atag 241  Q
    ||||    
T  32252630 atag 32252633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 16858447 - 16858360
Alignment:
Q  178 gagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc-ttaggactgagtccatatgcat 266  Q
    ||||||||| | |||| |||||| || |||||||| || || |||||||||||||||||||||| || ||||||  ||||||||||||||    
T  16858447 gagaaaagtccgataacataactttggcaaaatgacgaataggtgtggtaccacattcatataggtcgttagga--gagtccatatgcat 16858360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 35922663 - 35922744
Alignment:
Q  76 ccagtaagatacttttggcaactatgttg-agaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaa 156  Q
    ||||||| |||||| ||| || ||||| | |||||||| || ||| |||| ||||||||| |||||||||||||||||||||    
T  35922663 ccagtaacatacttctggaaattatgtgggagaaaagtccagtaacatatctctggcaactatgttgagaaaagtccagtaa 35922744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 23656830 - 23656926
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||| ||||||||| |||||| || | ||| |||||||||  || ||| |||||||||  |||| |||||||| | ||||||||||||||||||||    
T  23656830 aagtctagtaacatacctctggaaaactatgatgagaaaagcccagtaacataactctggaaaaacgatgagtaggagtggtaccacattcatatag 23656926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 24724912 - 24724998
Alignment:
Q  146 aagtccagtaacatatctctggtaa-ccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccac 231  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || ||| |||||| |||||| ||| |||||| | ||||||||||    
T  24724912 aagtccagtaacatacctctggcaagctatgatgagaaaagtccagtaacataactttgacaatatggtgagtaggagtggtaccac 24724998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 18988136 - 18988180
Alignment:
Q  221 tgtggtaccacattcatatagatcttaggactgagtccatatgcat 266  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||    
T  18988136 tgtggtaccacattcatataggtcttagga-tgactccatatgcat 18988180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 3089569 - 3089644
Alignment:
Q  205 caaaatgatgagtaagtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    ||||| |||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  3089569 caaaacgatgagtaggtctggtaccacattcatataggtcttaggtctgagtccatatgcataaaaattgatgatg 3089644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 16074830 - 16074891
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatgt 281  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| || |||| |||||    
T  16074830 gtgtggtaccacatgcatataggtcttaggactgagtccatatgcataaaatttgacgatgt 16074891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 4532170 - 4532266
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||| ||||||||| |||||| || | ||| |||||||||| || ||| |||||| || |||||||||||||| | ||||||||||| ||||||||    
T  4532170 aagtctagtaacatacctctggcaaactatgatgagaaaagtccagtaacataactatggcaaaatgatgagtaggagtggtaccacaatcatatag 4532266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 11655149 - 11655090
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||| |||||| |||||| || |||||||| ||||| ||||||||||||||||||||||    
T  11655149 aaagtccaataacataactttggcaaaatgacgagtaggtgtggtaccacattcatatag 11655090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 13477928 - 13477987
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||| || ||| |||||||||  ||||||||||||| ||||||||||||||||||||||    
T  13477928 aaagtccagtaacataactctggaaaaatgatgagtaggtgtggtaccacattcatatag 13477987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 37946273 - 37946368
Alignment:
Q  145 aaagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatg-atgagtaagtgtggtaccacattcata 238  Q
    |||||||| ||||||| |||||  || | |||| ||||||||| |||||| ||||||||| ||||||| | ||||| ||||| |||||||||||||    
T  37946273 aaagtccaataacatacctctgacaaactatgtagagaaaagtccaataacataactctggcaaaatggaagagtaggtgtgttaccacattcata 37946368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 18453 - 18513
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  18453 gtgtggtacgacattcatataggtcttaggactgagtccatatgcataaaaattgatgatg 18513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 21974904 - 21974783
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc 244  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | || |||||||| |||||||| ||    
T  21974904 aagtccagtaacatatctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagttgtaccacaatcatataggtc 21974805  T
Q  245 -ttaggactgagtccatatgcata 267  Q
     ||||||  |||||||||||||||    
T  21974804 gttagga--gagtccatatgcata 21974783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 21997335 - 21997214
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc 244  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | || |||||||| |||||||| ||    
T  21997335 aagtccagtaacatatctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagttgtaccacaatcatataggtc 21997236  T
Q  245 -ttaggactgagtccatatgcata 267  Q
     ||||||  |||||||||||||||    
T  21997235 gttagga--gagtccatatgcata 21997214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 13929182 - 13929278
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | ||||||||||| || |||||    
T  13929182 aagtccagtaacatacctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagtggtaccacaatcttatag 13929278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 16363042 - 16363136
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| |  |||||| |||||||||||||| | ||||||||||| ||||||||    
T  16363042 aagtccagtaacatatctctggcaaactatgatgagaaaagtccattaaca--actctggcaaaatgatgagtaggagtggtaccacaatcatatag 16363136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 22159475 - 22159383
Alignment:
Q  149 tccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| | |||||||||||| | ||||||||||| ||||||||    
T  22159475 tccagtaacatatctctggcaaactatgatgagaaaagt-cagtaacataactctggcgaaatgatgagtatgagtggtaccacaatcatatag 22159383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 1764 - 1824
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||    
T  1764 gtgtggtaccacattcatataggtcttaggactgagtccatatgcataaaatttgacgatg 1824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 17862583 - 17862643
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||    
T  17862583 gtgtggtaccacattcatataggtcttaggactgagtccatatgcataaaatttgacgatg 17862643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 1054 - 1005
Alignment:
Q  192 aatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  1054 aatataactctgacaaaatgacgagtaggtgtggtaccacattcatatag 1005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 13892 - 13773
Alignment:
Q  146 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc 244  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| |  |||||| |||||||||||||| | ||||||||||| |||||||||||    
T  13892 aagtccagtaacatatctctggcaaactatgatgagaaaagtccattaaca--actctggcaaaatgatgagtaggagtggtaccacaatcatatagatc 13795  T
Q  245 -ttaggactgagtccatatgcata 267  Q
     ||||||  |||| ||||||||||    
T  13794 gttagga--gagtacatatgcata 13773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 141962 - 141902
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| || |||| ||||    
T  141962 gtgtggtaccacattcatataggtcttaggactgagtccatttgcataaaatttgacgatg 141902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 5426 - 5472
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcat 266  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  5426 gtgtggtaccacattcatataggtcttaggaatgagtccatatgcat 5472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 16954 - 16894
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||| || |||| ||||    
T  16954 gtgtggtaccacattcatataggtcttagaaatgagtccatatgcataaaatttgacgatg 16894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 40797 - 40696
Alignment:
Q  141 gagaaaagtccagtaacatatctctggtaaccatgttga-gaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatat 239  Q
    |||||||||||| ||||||| |||| | ||| |||| |  ||||||| || ||||||||||||  ||||||| | ||||  |||||||||||||||||||    
T  40797 gagaaaagtccaataacatacctctagcaactatgtgggtgaaaagtccagtaatataactctagcaaaatggtaagtagatgtggtaccacattcatat 40698  T
Q  240 ag 241  Q
    ||    
T  40697 ag 40696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 13935423 - 13935351
Alignment:
Q  177 tgagaaaagttcaataatataactctgacaaa--atgatgagtaagtgtggtaccacattcatatagatctta 247  Q
    |||||||| | || ||| ||||||||||||||  ||||  |||| ||||||||||||||||||||||||||||    
T  13935423 tgagaaaaatccagtaacataactctgacaaactatgactagtaggtgtggtaccacattcatatagatctta 13935351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 24615019 - 24614936
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc-ttaggactgagtccatatgcat 266  Q
    ||||| || ||| ||||||||| |||||||| ||||| ||||||||  |||||||||||| || ||||||  ||||||||||||||    
T  24615019 aaagtccagtaacataactctggcaaaatgacgagtaggtgtggtatgacattcatataggtcgttagga--gagtccatatgcat 24614936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 24711417 - 24711334
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc-ttaggactgagtccatatgcat 266  Q
    ||||| || ||| ||||||||| |||||||| ||||| ||||||||  |||||||||||| || ||||||  ||||||||||||||    
T  24711417 aaagtccagtaacataactctggcaaaatgacgagtaggtgtggtatgacattcatataggtcgttagga--gagtccatatgcat 24711334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 24744413 - 24744330
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc-ttaggactgagtccatatgcat 266  Q
    ||||| || ||| ||||||||| |||||||| ||||| ||||||||  |||||||||||| || ||||||  ||||||||||||||    
T  24744413 aaagtccagtaacataactctggcaaaatgacgagtaggtgtggtatgacattcatataggtcgttagga--gagtccatatgcat 24744330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 24757179 - 24757096
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc-ttaggactgagtccatatgcat 266  Q
    ||||| || ||| ||||||||| |||||||| ||||| ||||||||  |||||||||||| || ||||||  ||||||||||||||    
T  24757179 aaagtccagtaacataactctggcaaaatgacgagtaggtgtggtatgacattcatataggtcgttagga--gagtccatatgcat 24757096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 19019504 - 19019444
Alignment:
Q  220 gtgtggtaccacattcatatagatcttaggactgagtccatatgcatacaaattgatgatg 280  Q
    |||| ||||||||||||||||| |  ||||| | ||||||||| |||| ||||||||||||    
T  19019504 gtgtagtaccacattcatataggtaataggatttagtccatatacataaaaattgatgatg 19019444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 12188 - 12129
Alignment:
Q  182 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacattcatatag 241  Q
    ||||| || ||| ||||||||| |||||||| ||||| || |||||||||||||||||||    
T  12188 aaagtccagtaacataactctggcaaaatgacgagtaggtttggtaccacattcatatag 12129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 20110 - 20181
Alignment:
Q  195 ataactctgacaaaatgatgagtaagtgtggtaccacattcatatagatc-ttaggactgagtccatatgcata 267  Q
    ||||||||| |||||||||||||| | ||||||||||| ||||| || || ||||||  |||||||||||||||    
T  20110 ataactctggcaaaatgatgagtaggagtggtaccacaatcatacaggtcgttagga--gagtccatatgcata 20181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University