View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_44 (Length: 255)
Name: NF5176_high_44
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 21384243 - 21384001
Alignment:
| Q |
1 |
aattattttttactaattaaaacaaattgaccaatttaatcaagtgaatggagtatatcaagtgattaattaa----atttcgaatagagtttctgaagt |
96 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||| |||| |
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| T |
21384243 |
aattatattttactacttaaaacaaattgaccaatttaatcaagtgaatg-agtatatcaagtgattgattaatcaaattttgaatagagtttctaaagt |
21384145 |
T |
|
| Q |
97 |
ttgaactctgacaaaaataattattgattagacattatttacctcccgattataggtta-aaccagtttcattttaaaaaatcaaatgatttgactgcac |
195 |
Q |
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|||||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
21384144 |
ttgaactctgacggaaacaattattgattagacgttatttacctcctgattataggttataaccagtttcattctaaaaaatcaaatgatttgactgcat |
21384045 |
T |
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| Q |
196 |
atcttcatcgtaaacttttgaatataagggtcctctttaactcc |
239 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21384044 |
atcttcatcgtaaacttttggatataagggtcctctttaactcc |
21384001 |
T |
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