View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_49 (Length: 249)
Name: NF5176_high_49
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_49 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 4259320 - 4259077
Alignment:
| Q |
6 |
ccaagaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259320 |
ccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
4259221 |
T |
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| Q |
106 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
205 |
Q |
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| T |
4259220 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
4259121 |
T |
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| Q |
206 |
aagacaaactttgccttgataattataaagtattatactacata |
249 |
Q |
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| T |
4259120 |
aagacaaactttgccttgataattataaagtattatactacata |
4259077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 4262942 - 4262699
Alignment:
| Q |
6 |
ccaagaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262942 |
ccaaaaatatgaatgaatgaagaaactgtaaaatattgagaatctgaaacttccaagttccatccacattgagaagcctacaaatatatatggagcaaaa |
4262843 |
T |
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| Q |
106 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
205 |
Q |
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| T |
4262842 |
tcaaaacgagagggagttacatatatgaatgattctactttacagaagaattttataaacatgtggcttcgccaaaaactcatgaaaaattgcaatatag |
4262743 |
T |
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| Q |
206 |
aagacaaactttgccttgataattataaagtattatactacata |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262742 |
aagacaaactttgccttgataattataaagtattatactacata |
4262699 |
T |
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