View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_56 (Length: 242)
Name: NF5176_high_56
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 21384317 - 21384540
Alignment:
| Q |
1 |
taatataaaccattacatctcacttgaacttttaaagtagggtttcacatcaaaggagnnnnnnnncaccaaatcctatctaggagtttcaacggtgtaa |
100 |
Q |
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| T |
21384317 |
taatataaaccattacatctgacttgaacttttaaagtaggtttcaacatcaaaggagaaaaaaa-caccaaatcctatctaggagtttcaacggtgtaa |
21384415 |
T |
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| Q |
101 |
aactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaac-aaataaagtggggcatataacttgtactactagtggg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
21384416 |
aactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaacaaaataaagtggggc--ataacttgtactactagtggg |
21384513 |
T |
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| Q |
200 |
taggagttgtatttggtggtgttgctg |
226 |
Q |
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| T |
21384514 |
taggagttgtatttggtggtgttgctg |
21384540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 21373108 - 21373017
Alignment:
| Q |
135 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21373108 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctg |
21373017 |
T |
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