View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_57 (Length: 242)
Name: NF5176_high_57
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_57 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 46961233 - 46961015
Alignment:
| Q |
24 |
gcgtgttctctgtctggatttatagttgttgtttttccatatgggaaaacttttcttgtccatccaattgacattggtggtccgtatcgatcaaagatca |
123 |
Q |
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| T |
46961233 |
gcgtgttctctgtctggatttatagttgttgtttttccatatgggaaaacttttcttgtccatccaattgacattggtggtccgtgtcgatcaaagatca |
46961134 |
T |
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| Q |
124 |
ctttgagggtaagcaccaagagcgtgtaaaatctctgtgattttaaacaagtttctgtggtatgcatctttcaattactgaatgaagtgtatcttttgga |
223 |
Q |
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| T |
46961133 |
ctttgagggtaagcaccaagagcgtgtaaaatctctgtgattttaaacaagtttctgtcgtatgcatctttcaattcctgaatgaagtgtatcttttgga |
46961034 |
T |
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| Q |
224 |
aaatatttatttacttatg |
242 |
Q |
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| T |
46961033 |
aaatatttatttacttatg |
46961015 |
T |
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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 44520337 - 44520544
Alignment:
| Q |
27 |
tgttctctgtctggatttatagttgttgtttttccatatgggaaaacttttcttgtccatccaattgacattggtggtccgtatcgatcaaagatcactt |
126 |
Q |
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| T |
44520337 |
tgttctctctctggattcatcaatattgtttttccatatcaaaaaacttttcttgtcactccaattgacattggcggaccgtgtcgatctaagatcactt |
44520436 |
T |
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| Q |
127 |
tgagggtaagcaccaagagcgtgtaaaatctctgtgattttaaacaagtttctgtggtatgcatctttcaattactgaatgaagtgtatcttttggaaaa |
226 |
Q |
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| T |
44520437 |
tgagggtaagcactaagagtgtatgaaatctaccagattttaagcaaatttctgtcatatgcatctttcaaatcttgaatgaaatgtgtcgtattgaaaa |
44520536 |
T |
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| Q |
227 |
tatttatt |
234 |
Q |
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| T |
44520537 |
tgtttatt |
44520544 |
T |
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