View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_59 (Length: 240)
Name: NF5176_high_59
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_59 |
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| [»] scaffold0277 (1 HSPs) |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: scaffold0277 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 5574 - 5407
Alignment:
| Q |
1 |
ttggtaaaagtgtaaaaccaaataaaagcttattgtggatattaagcnnnnnnnatgagttaactaaatagctagccagtttaacatggatattaagctg |
100 |
Q |
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| T |
5574 |
ttggtaaaagtgtaaaaccaaataaaagcttattgtggatattaagctttttttatgagttaactaaatagctagccagtttaacatggatattaagctg |
5475 |
T |
|
| Q |
101 |
tacattgttatatatgtcagtacagttggatagctaattaactatttacagtaataattgtgtgtgca |
168 |
Q |
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| T |
5474 |
tacattgttatatatgtcagtacagttggatagctaattaactatttacagtaataattgtgtgtgca |
5407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 27593802 - 27593741
Alignment:
| Q |
147 |
tacagtaataattgtgtgtgcatggttaattaaccatttggttaaagtcaagtggtaatattttcaa |
213 |
Q |
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| T |
27593802 |
tacaataataattgtgtgtgcatggttaattaaccatttggt-----tcaagtggtaatattttcaa |
27593741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 27678268 - 27678329
Alignment:
| Q |
147 |
tacagtaataattgtgtgtgcatggttaattaaccatttggttaaagtcaagtggtaatattttcaa |
213 |
Q |
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| T |
27678268 |
tacaataataattgtgtgtgcatggttaattaaccatttggt-----tcaagtggtaatattttcaa |
27678329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 27699193 - 27699138
Alignment:
| Q |
153 |
aataattgtgtgtgcatggttaattaaccatttggttaaagtcaagtggtaatattttcaa |
213 |
Q |
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| T |
27699193 |
aataattgtgtgtgcaaggttaattaaccatttggt-----tcaagtggtaatattttcaa |
27699138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 27725584 - 27725529
Alignment:
| Q |
153 |
aataattgtgtgtgcatggttaattaaccatttggttaaagtcaagtggtaatattttcaa |
213 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27725584 |
aataattgtgtgtacatggttaattaaccatttggt-----tcaagtggtaatattttcaa |
27725529 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 27339339 - 27339294
Alignment:
| Q |
147 |
tacagtaataattgtgtgtgcatggttaattaaccatttggttaaa |
192 |
Q |
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|||| |||||||||||||||||||||||||||| ||||| |||||| |
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| T |
27339339 |
tacactaataattgtgtgtgcatggttaattaatcatttagttaaa |
27339294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 27400079 - 27400034
Alignment:
| Q |
147 |
tacagtaataattgtgtgtgcatggttaattaaccatttggttaaa |
192 |
Q |
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|||| |||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
27400079 |
tacactaataattgtgtgtgcatggttaattaatcatttagttaaa |
27400034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 26654870 - 26654909
Alignment:
| Q |
146 |
ttacagtaataattgtgtgtgcatggttaattaaccattt |
185 |
Q |
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||||| |||||||||||||||||||||||||||| ||||| |
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| T |
26654870 |
ttacactaataattgtgtgtgcatggttaattaatcattt |
26654909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 26760840 - 26760879
Alignment:
| Q |
146 |
ttacagtaataattgtgtgtgcatggttaattaaccattt |
185 |
Q |
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||||| |||||||||||||||||||||||||||| ||||| |
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| T |
26760840 |
ttacactaataattgtgtgtgcatggttaattaatcattt |
26760879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 4160 - 4119
Alignment:
| Q |
153 |
aataattgtgtgtgcatggttaattaaccatttggttaaagt |
194 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
4160 |
aataattgtgtgtacatggttaattaaccatttggttcaagt |
4119 |
T |
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