View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_63 (Length: 239)
Name: NF5176_high_63
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7717083 - 7716863
Alignment:
| Q |
1 |
actgacacagtttgtgttcaatacaacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggc |
100 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7717083 |
actgacacagtttgtgttcgatacgacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggc |
7716984 |
T |
|
| Q |
101 |
ttggaaaatttgaggcattgtccaacagaagctaagcgcatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7716983 |
ttggaaaatttgaggcattgtccaacagaagctaagcacatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactg |
7716884 |
T |
|
| Q |
201 |
ttggtgacgccagtgacttgg |
221 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
7716883 |
ttggtgatgccagtgacttgg |
7716863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 7127636 - 7127432
Alignment:
| Q |
3 |
tgacacagtttgtgttcaatacaacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggctt |
102 |
Q |
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||||||| |||||||| ||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7127636 |
tgacacactttgtgttagatacaacttctaaagacagtgctaaaactagtgaactagggggattacataacttgaggggacgactcgtgataaaaggctt |
7127537 |
T |
|
| Q |
103 |
ggaaaatttgaggcattgtccaacagaagctaagcgcatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactgtt |
202 |
Q |
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|||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| |
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| T |
7127536 |
ggaacatttgaggcattgtccaacagaagctaaacatatgaatttaatagggaagtcacatcttcatcgattgacattgaattggaaacaacacactgtt |
7127437 |
T |
|
| Q |
203 |
ggtga |
207 |
Q |
| |
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||||| |
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| T |
7127436 |
ggtga |
7127432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 7495898 - 7496102
Alignment:
| Q |
3 |
tgacacagtttgtgttcaatacaacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggctt |
102 |
Q |
| |
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||||||| |||||||| ||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7495898 |
tgacacactttgtgttagatacaacttctaaagacagtgctaaaactagtgaactagggggattacataacttgaggggacgactcgtgataaaaggctt |
7495997 |
T |
|
| Q |
103 |
ggaaaatttgaggcattgtccaacagaagctaagcgcatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactgtt |
202 |
Q |
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|||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||| | | |||||||| |
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| T |
7495998 |
ggaacatttgaggcattgtccaacagaagctaaacatatgaatttaatagggaagtcacatcttcatcgattgacattgaattggaaggaagacactgtt |
7496097 |
T |
|
| Q |
203 |
ggtga |
207 |
Q |
| |
|
||||| |
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|
| T |
7496098 |
ggtga |
7496102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 7529619 - 7529830
Alignment:
| Q |
1 |
actgacacagtttgtgttcaatacaacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||| || | ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
7529619 |
actgacacagtttgtgttagatacaacttctaaagatagtgctaaaactagtgagctaggaggattacataacttgaggggactactcgagataactggc |
7529718 |
T |
|
| Q |
101 |
ttggaaaatttgaggcattgtccaacagaagctaagcgcatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactg |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||| ||||||||||||| | | ||| || |
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| T |
7529719 |
ttggaacatttgaggcattgtccaacagaagctaagcctatgaatttaagagggaagtcacatcttgattggttggcattgaattggaaggaagacaatg |
7529818 |
T |
|
| Q |
201 |
ttggtgacgcca |
212 |
Q |
| |
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||||||| |||| |
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| T |
7529819 |
ttggtgatgcca |
7529830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 7483501 - 7483703
Alignment:
| Q |
5 |
acacagtttgtgttcaatacaacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggcttgg |
104 |
Q |
| |
|
||||| |||||||| |||| || || | ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
7483501 |
acacaatttgtgttagatacgacttctaaagatagtgctaaaactagtgagctaggaggattacataacttgaggggactactcgagataactggcttgg |
7483600 |
T |
|
| Q |
105 |
aaaatttgaggcattgtccaacagaagctaagcgcatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactgttgg |
204 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||| ||||| |||||||||||| |
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| T |
7483601 |
aacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagtcacatcttcatcgattgagattgaagtggaaacaacacactgttgg |
7483700 |
T |
|
| Q |
205 |
tga |
207 |
Q |
| |
|
||| |
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|
| T |
7483701 |
tga |
7483703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 7720913 - 7720725
Alignment:
| Q |
1 |
actgacacagtttgtgttcaatacaacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggc |
100 |
Q |
| |
|
|||||||||||||||||| |||| || || ||||||| ||||||| ||||| |||||||||||| |||| |||||||||| ||||| |||||||||| |
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| T |
7720913 |
actgacacagtttgtgttagatacgacttctagagacaaatctaaaacaagtgagctaggaggattaaataatttgaggggacaactcgagataaatggc |
7720814 |
T |
|
| Q |
101 |
ttggaaaatttgaggcattgtccaacagaagctaagcgcatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaa |
189 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7720813 |
ttggaacatctgaggcattgtccaacagaagctaagcatatgaatttaatagggaagtcacatcttcgtcgattgacattgaattggaa |
7720725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7521554 - 7521760
Alignment:
| Q |
1 |
actgacacagtttgtgttcaatacaacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggc |
100 |
Q |
| |
|
||||||||| |||||||| ||||||| || | ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||| |
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|
| T |
7521554 |
actgacacactttgtgttagatacaacttctaaagacagtgctaaaactagtgagctaggaggattacataatttgaggggacgactcgagataaaaggc |
7521653 |
T |
|
| Q |
101 |
ttggaaaatttgaggcattgtccaacagaagctaagcgcatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactg |
200 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||| ||||||| ||| |||| |
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|
| T |
7521654 |
ttggaacatctgaggccttgtccaacagaagctaagcatatgaatttaatagggaagtcacatcttgattggttatcattgaaatggaatgaacagactg |
7521753 |
T |
|
| Q |
201 |
ttggtga |
207 |
Q |
| |
|
||||||| |
|
|
| T |
7521754 |
ttggtga |
7521760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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