View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_high_67 (Length: 238)

Name: NF5176_high_67
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_high_67
NF5176_high_67
[»] chr8 (4 HSPs)
chr8 (69-221)||(3058311-3058480)
chr8 (73-221)||(3062616-3062781)
chr8 (73-221)||(26082916-26083081)
chr8 (76-124)||(26065168-26065216)
[»] chr1 (4 HSPs)
chr1 (73-221)||(4877259-4877422)
chr1 (73-221)||(4872957-4873122)
chr1 (118-221)||(30189939-30190042)
chr1 (73-124)||(30189876-30189928)
[»] chr6 (1 HSPs)
chr6 (73-221)||(6667979-6668144)
[»] chr4 (5 HSPs)
chr4 (73-221)||(17439419-17439584)
chr4 (73-221)||(17443721-17443886)
chr4 (1-71)||(31496281-31496351)
chr4 (1-59)||(31476353-31476411)
chr4 (2-67)||(31151061-31151126)
[»] chr3 (2 HSPs)
chr3 (120-183)||(28010300-28010363)
chr3 (73-101)||(28013761-28013789)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 3058311 - 3058480
Alignment:
Q  69 ttactgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcag 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  3058311 ttactgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcag 3058410  T
Q  152 aagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058411 aagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 3058480  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 3062616 - 3062781
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcagaagt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||    
T  3062616 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 3062715  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062716 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 3062781  T

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Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 26083081 - 26082916
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  26083081 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 26082982  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26082981 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 26082916  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 26065216 - 26065168
Alignment:
Q  76 tgagacattgagatttcagatgtacacaatagtattttgtgatatttta 124  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||    
T  26065216 tgagacattgagatttcagattaatacaatagtattttgtgatatttta 26065168  T

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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 4877259 - 4877422
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt---------------ttaatgtagtagttgaagttacctctgcagaagtat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||    
T  4877259 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 4877358  T
Q  158 ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877359 ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 4877422  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 4872957 - 4873122
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcagaagt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||    
T  4872957 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt 4873056  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873057 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 4873122  T

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Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 30189939 - 30190042
Alignment:
Q  118 tattttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30189939 tattttaatgtagtagttgaagttacctctgcaaaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac 30190038  T
Q  218 tatg 221  Q
    ||||    
T  30190039 tatg 30190042  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 30189876 - 30189928
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagta-ttttgtgatatttta 124  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  30189876 tgttgagacattgagctttcagatgtacacaatagtatttttgtgatatttta 30189928  T

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Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 6668144 - 6667979
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  6668144 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt 6668045  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668044 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 6667979  T

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Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 17439584 - 17439419
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  17439584 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 17439485  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439484 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 17439419  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 17443886 - 17443721
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  17443886 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 17443787  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443786 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 17443721  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31496351 - 31496281
Alignment:
Q  1 ttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagctta 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31496351 ttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagctta 31496281  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31476411 - 31476353
Alignment:
Q  1 ttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgca 59  Q
    |||||||||| |||||| |||| ||||||||||| |||||||||||   ||||||||||    
T  31476411 ttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgca 31476353  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 31151061 - 31151126
Alignment:
Q  2 tgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggag 67  Q
    |||| ||||||||||| | || || ||||||||||||| |||||||| ||||||||| | ||||||    
T  31151061 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggag 31151126  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 28010363 - 28010300
Alignment:
Q  120 ttttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgttt 183  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  28010363 ttttaatatagttgttgaagttacctctgcataagtatggtgacccatacttgttgaagtgttt 28010300  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 28013789 - 28013761
Alignment:
Q  73 tgttgagacattgagatttcagatgtaca 101  Q
    |||||||||||||||||||||||||||||    
T  28013789 tgttgagacattgagatttcagatgtaca 28013761  T

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