View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_high_68 (Length: 233)

Name: NF5176_high_68
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_high_68
NF5176_high_68
[»] chr5 (19 HSPs)
chr5 (10-233)||(30072044-30072267)
chr5 (85-184)||(24517295-24517394)
chr5 (99-184)||(12340089-12340173)
chr5 (100-184)||(17382110-17382194)
chr5 (100-184)||(25594767-25594851)
chr5 (100-184)||(17027483-17027567)
chr5 (67-153)||(22229731-22229818)
chr5 (100-184)||(24841709-24841793)
chr5 (100-184)||(18222449-18222533)
chr5 (77-184)||(22967917-22968025)
chr5 (75-184)||(15205575-15205683)
chr5 (99-184)||(16622742-16622826)
chr5 (99-168)||(25075328-25075397)
chr5 (99-168)||(25133297-25133366)
chr5 (99-154)||(22754903-22754958)
chr5 (79-182)||(26070409-26070512)
chr5 (121-183)||(23157864-23157926)
chr5 (134-184)||(25680586-25680636)
chr5 (111-179)||(11274411-11274479)
[»] chr2 (16 HSPs)
chr2 (77-181)||(21505217-21505322)
chr2 (76-184)||(25473968-25474077)
chr2 (77-184)||(35707735-35707843)
chr2 (100-185)||(32619598-32619683)
chr2 (121-184)||(16593827-16593890)
chr2 (123-184)||(30998750-30998811)
chr2 (100-184)||(28278498-28278581)
chr2 (107-185)||(1733063-1733141)
chr2 (76-185)||(18236376-18236486)
chr2 (122-184)||(21844704-21844766)
chr2 (89-184)||(19949629-19949725)
chr2 (77-184)||(32276588-32276696)
chr2 (100-147)||(31914045-31914092)
chr2 (122-184)||(21843077-21843139)
chr2 (146-183)||(15829136-15829173)
chr2 (189-233)||(22511053-22511097)
[»] chr8 (14 HSPs)
chr8 (88-182)||(12956432-12956527)
chr8 (106-184)||(14977182-14977260)
chr8 (77-178)||(16052358-16052460)
chr8 (100-182)||(24120187-24120269)
chr8 (77-184)||(13082012-13082120)
chr8 (77-184)||(16054226-16054334)
chr8 (100-184)||(28901415-28901499)
chr8 (100-184)||(32239243-32239327)
chr8 (77-174)||(29047401-29047499)
chr8 (104-177)||(6358658-6358731)
chr8 (102-181)||(26882365-26882445)
chr8 (121-184)||(5570216-5570279)
chr8 (104-184)||(13530180-13530260)
chr8 (104-184)||(13619719-13619799)
[»] chr3 (17 HSPs)
chr3 (106-184)||(33914637-33914715)
chr3 (77-184)||(25919539-25919647)
chr3 (99-182)||(1475357-1475441)
chr3 (76-181)||(19219289-19219395)
chr3 (99-182)||(12573244-12573328)
chr3 (99-182)||(13549708-13549792)
chr3 (107-184)||(21017840-21017917)
chr3 (111-185)||(10341763-10341836)
chr3 (106-184)||(13911227-13911305)
chr3 (111-188)||(10303427-10303504)
chr3 (125-185)||(8402624-8402684)
chr3 (121-184)||(11521117-11521180)
chr3 (75-184)||(25883033-25883143)
chr3 (76-172)||(17637034-17637131)
chr3 (144-184)||(2729693-2729733)
chr3 (99-184)||(12409413-12409498)
chr3 (78-182)||(25188691-25188796)
[»] chr7 (16 HSPs)
chr7 (100-184)||(29544475-29544559)
chr7 (99-184)||(22067881-22067967)
chr7 (100-184)||(20470885-20470969)
chr7 (77-176)||(20446171-20446271)
chr7 (100-184)||(7142054-7142138)
chr7 (89-176)||(7815267-7815355)
chr7 (89-178)||(315129-315219)
chr7 (132-182)||(1255290-1255340)
chr7 (106-184)||(23124863-23124940)
chr7 (77-172)||(21471729-21471825)
chr7 (100-148)||(19140085-19140133)
chr7 (100-148)||(20739484-20739532)
chr7 (100-184)||(21545874-21545957)
chr7 (100-184)||(7494667-7494751)
chr7 (119-183)||(9385463-9385527)
chr7 (121-185)||(46054675-46054739)
[»] chr1 (19 HSPs)
chr1 (100-184)||(23223367-23223451)
chr1 (77-184)||(12423989-12424097)
chr1 (74-184)||(50047110-50047221)
chr1 (77-184)||(8247732-8247840)
chr1 (106-184)||(12810284-12810362)
chr1 (100-182)||(26657432-26657514)
chr1 (100-184)||(30675439-30675524)
chr1 (99-174)||(21451900-21451976)
chr1 (121-184)||(24903370-24903433)
chr1 (100-182)||(18301080-18301164)
chr1 (100-181)||(25730649-25730729)
chr1 (100-184)||(11770069-11770153)
chr1 (88-167)||(30781703-30781783)
chr1 (86-184)||(18795122-18795221)
chr1 (100-174)||(25266430-25266503)
chr1 (111-184)||(23519830-23519903)
chr1 (107-184)||(34381671-34381748)
chr1 (108-184)||(18391046-18391122)
chr1 (140-184)||(25494554-25494598)
[»] chr4 (16 HSPs)
chr4 (98-184)||(5906795-5906881)
chr4 (107-183)||(34864367-34864443)
chr4 (107-184)||(12111407-12111482)
chr4 (100-184)||(1676370-1676454)
chr4 (100-184)||(1682898-1682982)
chr4 (73-184)||(25315306-25315418)
chr4 (78-184)||(9783058-9783165)
chr4 (100-176)||(1696652-1696726)
chr4 (85-185)||(22119586-22119687)
chr4 (100-184)||(18897947-18898031)
chr4 (100-183)||(25050141-25050224)
chr4 (116-184)||(4953654-4953722)
chr4 (107-153)||(15192166-15192212)
chr4 (121-169)||(5125581-5125629)
chr4 (121-184)||(27302755-27302818)
chr4 (100-184)||(31859955-31860039)
[»] scaffold0171 (1 HSPs)
scaffold0171 (100-184)||(6152-6236)
[»] chr6 (11 HSPs)
chr6 (77-184)||(15574857-15574964)
chr6 (100-167)||(15576254-15576321)
chr6 (79-178)||(30355260-30355360)
chr6 (121-184)||(13759526-13759589)
chr6 (104-185)||(14924491-14924572)
chr6 (100-179)||(16527852-16527925)
chr6 (107-182)||(16387325-16387400)
chr6 (121-184)||(32930547-32930610)
chr6 (78-182)||(15998444-15998549)
chr6 (100-172)||(12972471-12972543)
chr6 (104-184)||(20495868-20495948)
[»] scaffold0002 (1 HSPs)
scaffold0002 (76-153)||(446936-447014)
[»] scaffold0188 (1 HSPs)
scaffold0188 (104-181)||(27032-27109)
[»] scaffold0386 (2 HSPs)
scaffold0386 (77-181)||(8787-8892)
scaffold0386 (107-177)||(13153-13223)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 30072044 - 30072267
Alignment:
Q  10 attattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctccaccttgcatattgatgacggaacatcatgtgttattttggctat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072044 attattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctccaccttgcatattgatgacggaacatcatgtgttattttggctat 30072143  T
Q  110 gttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaagtattttgagtgctttgtagtggg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||    
T  30072144 gttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacaggtgttttgagtgctttgtagtggg 30072243  T
Q  210 aaatcatgttaatcgaaaaatcaa 233  Q
    ||||||| |||||||| |||||||    
T  30072244 aaatcatattaatcgacaaatcaa 30072267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 24517295 - 24517394
Alignment:
Q  85 gaacatcatgtgttattttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||| | ||| |||||| | |||||||| ||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24517295 gaacattaagtgatattttagttatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 24517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 12340173 - 12340089
Alignment:
Q  99 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  12340173 attttggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaaca 12340089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 17382194 - 17382110
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| ||||||| || ||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  17382194 tttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaaca 17382110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 25594851 - 25594767
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||| |||| || ||||||||||||||||||    
T  25594851 ttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaaca 25594767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 17027483 - 17027567
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||| |||||||||||||| |||| ||||||| |||||||||| ||| ||| || ||||| |||||||||||||    
T  17027483 ttttggctatgtttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaaca 17027567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 22229731 - 22229818
Alignment:
Q  67 ccttgcatattgatgacggaacatcatgtgttattttggctatgtttta-agtacttttctttggatttgaagacaaataagatgaga 153  Q
    ||||| || |||||||| || |||||| ||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  22229731 ccttggatgttgatgacagagcatcatatgtcattttggctatgttttttagtacttttctttgcatttgaagacaaataagatgaga 22229818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 24841709 - 24841793
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| |||||||||| |||||| ||||||| ||||||||||||||||| | |||  || ||||||| ||||||||||||||||||    
T  24841709 tttttgctatgtttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaaca 24841793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 18222449 - 18222533
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| ||||| |||| |||| |||| |||  ||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||    
T  18222449 ttttagctatatttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaaca 18222533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 22968025 - 22967917
Alignment:
Q  77 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    ||||||||||  ||||| || |||||| ||||||||||| |||| ||||||||| || | |||||||||||||||    ||| ||||||||| |||||||    
T  22968025 tgatgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtt 22967926  T
Q  176 tgaggaaca 184  Q
    |||||||||    
T  22967925 tgaggaaca 22967917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 15205575 - 15205683
Alignment:
Q  75 attgatgacggaacatcatgtgttattttggctatgttttaagtacttttc-tttggatttgaagacaaataagatgagaattataggagttgtcaatgg 173  Q
    ||||||||| || |||||| || ||||||| ||||||||| |||| ||||  |||| |||| || ||||||||||||||  ||| ||||||||||| |||    
T  15205575 attgatgacagagcatcatatgatattttgactatgtttttagtattttttatttgcatttaaatacaaataagatgag--ttaaaggagttgtcagtgg 15205672  T
Q  174 tttgaggaaca 184  Q
    |||||||||||    
T  15205673 tttgaggaaca 15205683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 16622826 - 16622742
Alignment:
Q  99 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||| |||||||||| |||| |||| |||  ||||||||||||||| ||  ||| ||| ||||||||||||||||||||||||||    
T  16622826 attttagctatgtttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaaca 16622742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 25075397 - 25075328
Alignment:
Q  99 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtc 168  Q
    |||||||||||||||| |||| ||||||||| | |||||||||||||| || ||| ||| ||||||||||    
T  25075397 attttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 25133366 - 25133297
Alignment:
Q  99 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtc 168  Q
    |||||||||||||||| |||| ||||||||| | |||||||||||||| || ||| ||| ||||||||||    
T  25133366 attttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 22754903 - 22754958
Alignment:
Q  99 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaa 154  Q
    ||||||| |||||||| ||||| |||||||| |||| |||||||||||||||||||    
T  22754903 attttggatatgtttttagtacgtttctttgcatttaaagacaaataagatgagaa 22754958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 26070409 - 26070512
Alignment:
Q  79 atgacggaacatcatgtgttattttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 178  Q
    |||| |||||||||| || | ||||||||||||||| |||  ||||||||| |||| ||| ||||||||| |  | ||| |||||||||||||  |||||    
T  26070409 atgatggaacatcatatgattttttggctatgtttttagttattttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaatcatttga 26070508  T
Q  179 ggaa 182  Q
    ||||    
T  26070509 ggaa 26070512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 23157926 - 23157864
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaac 183  Q
    ||||||||| ||||||||  |||| ||| |  ||||| |||||||||||||||||||||||||    
T  23157926 ttttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatggtttgaggaac 23157864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 25680586 - 25680636
Alignment:
Q  134 tgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||||| ||||||||| |||| ||| || ||||||||||||||||||    
T  25680586 tgaagacaaaaaagatgagagttattggatttttcaatggtttgaggaaca 25680636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 11274479 - 11274411
Alignment:
Q  111 ttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgag 179  Q
    |||| |||||||||||||| |||| ||||| |||||||| |||  || |  ||||||||||||||||||    
T  11274479 tttttagtacttttctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgag 11274411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 21505322 - 21505217
Alignment:
Q  77 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    |||||||||| |||||| || |||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||    
T  21505322 tgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtt 21505223  T
Q  176 tgagga 181  Q
    ||||||    
T  21505222 tgagga 21505217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 25473968 - 25474077
Alignment:
Q  76 ttgatgacggaacatcatgtgttattttggctatgttttaagtac-ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 174  Q
    |||||||| || |||||| ||  |||||||||||||||| ||||| |||| |||  ||||||||||||||||||||||| ||| ||||||||||||| ||    
T  25473968 ttgatgacagagcatcatatgacattttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgt 25474067  T
Q  175 ttgaggaaca 184  Q
    ||||||||||    
T  25474068 ttgaggaaca 25474077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 35707735 - 35707843
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    ||||||| || |||||| ||  |||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||| || ||||||||||||||    
T  35707735 tgatgacagagcatcatatgacattttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtt 35707834  T
Q  176 tgaggaaca 184  Q
    |||| ||||    
T  35707835 tgagaaaca 35707843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 32619598 - 32619683
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaa 185  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||  |||||  || ||||||||| ||||||| |||||||||    
T  32619598 ttttggctatatttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaacaa 32619683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 16593890 - 16593827
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| |||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  16593890 ttttttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaaca 16593827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 30998750 - 30998811
Alignment:
Q  123 ttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||  |||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaaca 30998811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 28278581 - 28278498
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| ||||||||||| ||||||||||||| |||||||| ||||||||| |||| ||| |||| || |||||||||||| |||||    
T  28278581 tttttgctatgtttta-gtacttttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaaca 28278498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 1733063 - 1733141
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaa 185  Q
    |||||||| ||||||||| |||  |||||||||||||| |||||||| ||| ||||||||||||||  ||||| |||||    
T  1733063 tatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaacaa 1733141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 18236486 - 18236376
Alignment:
Q  76 ttgatgacggaacatcatgtgttattttg-gctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 174  Q
    ||||||||||| |||||| || ||||||  |||||||||| |||  ||||||||| |||||||| |||| ||  ||  | |||||| |||||||||||||    
T  18236486 ttgatgacggagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggt 18236387  T
Q  175 ttgaggaacaa 185  Q
    ||||| |||||    
T  18236386 ttgagaaacaa 18236376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 21844766 - 21844704
Alignment:
Q  122 tttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||| ||||||||||||||||| ||  | ||| |||||||||||||||||| |||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaaca 21844704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 19949725 - 19949629
Alignment:
Q  89 atcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||| || ||||||  ||||||||| ||||||||| ||||| ||||||||| |||||| ||||||  |  ||||||||| ||| ||||||||||||    
T  19949725 atcatatgatattttttctatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaaca 19949629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 32276696 - 32276588
Alignment:
Q  77 tgatgacggaacatcatgtgtta-ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    |||||| |||||||||| || || |||||| |||||||| |||  ||||||||| ||||||||  |||||||| |  | ||| ||||| |||||||||||    
T  32276696 tgatgaaggaacatcatatggtacttttggatatgtttttagttattttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtt 32276597  T
Q  176 tgaggaaca 184  Q
    ||| |||||    
T  32276596 tgaagaaca 32276588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 31914092 - 31914045
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataag 147  Q
    |||| |||||||||| |||| ||||||||| |||||||||||||||||    
T  31914092 tttttgctatgtttttagtatttttctttgcatttgaagacaaataag 31914045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 21843139 - 21843077
Alignment:
Q  122 tttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||| ||||||||||||||||| ||  | ||| |||||||| ||||||||| |||||||    
T  21843139 tttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttttaggaaca 21843077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 15829136 - 15829173
Alignment:
Q  146 agatgagaattataggagttgtcaatggtttgaggaac 183  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  15829136 agatgagagttagaggagttgtcaatggtttgaggaac 15829173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 22511053 - 22511097
Alignment:
Q  189 ttttgagtgctttgtagtgggaaatcatgttaatcgaaaaatcaa 233  Q
    |||||| || ||||||||| |||||||||| ||||||||||||||    
T  22511053 ttttgattgttttgtagtgagaaatcatgtaaatcgaaaaatcaa 22511097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 12956432 - 12956527
Alignment:
Q  88 catcatgtgttattttgg-ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    ||||||||| |||||| | ||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  12956432 catcatgtgatatttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaa 12956527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 14977260 - 14977182
Alignment:
Q  106 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||| || ||||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  14977260 ctatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaaca 14977182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 16052460 - 16052358
Alignment:
Q  77 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    |||||||||| |||||| || |||||| ||||||||||| ||||||||| |||| |||||| ||||||||| |||||| ||| |||||||||||||||||    
T  16052460 tgatgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtt 16052361  T
Q  176 tga 178  Q
    |||    
T  16052360 tga 16052358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 24120187 - 24120269
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    |||| |||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||| |||||||||||    
T  24120187 tttttgctatgtttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaa 24120269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 13082120 - 13082012
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    |||||||  |||||||| ||  ||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||| ||    
T  13082120 tgatgacaaaacatcatatgacattttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatt 13082021  T
Q  176 tgaggaaca 184  Q
    |||| ||||    
T  13082020 tgagaaaca 13082012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 16054226 - 16054334
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    ||||||| || |||||| ||  ||||||||||||| || ||||||||| ||||| ||||||||||||||||||| ||| ||| |||||||||||||| ||    
T  16054226 tgatgacagagcatcatatgacattttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgatt 16054325  T
Q  176 tgaggaaca 184  Q
    | |||||||    
T  16054326 taaggaaca 16054334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 28901499 - 28901415
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||| ||| | |||||||||||| ||||||| ||||||||| |||||  || ||||||||||||||||||||||||||    
T  28901499 ttttggctatgcttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaaca 28901415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 32239243 - 32239327
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||| || ||||||||||  ||||||||| | ||||||| | ||||| ||||||||||||||||||||| ||||    
T  32239243 ttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaaca 32239327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 29047499 - 29047401
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 174  Q
    ||||||| || |||||| || || ||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  29047499 tgatgacagagcatcatatgataatttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt 29047401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 6358658 - 6358731
Alignment:
Q  104 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttg 177  Q
    ||||||||||| ||||||||| |||| ||||||||||| ||||| |||||  || ||||||||| |||||||||    
T  6358658 ggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttg 6358731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 26882365 - 26882445
Alignment:
Q  102 ttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgagga 181  Q
    ||||||||||||| ||||||||| ||| | | | |||||||||||| |||||| ||| |||||||| ||||||||| ||||    
T  26882365 ttggctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggtttaagga 26882445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 5570279 - 5570216
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| |||| ||||||||| ||||||||||||| ||  |||||||||||||  |||||||||||    
T  5570279 ttttttttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaaca 5570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 13530260 - 13530180
Alignment:
Q  104 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||| |||  | ||||||| | |||||||||||||||| |  | ||| ||||| |||| |||||||||||||||    
T  13530260 ggctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaaca 13530180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 13619799 - 13619719
Alignment:
Q  104 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||| |||  | ||||||| | |||||||||||||||| |  | ||| ||||| |||| |||||||||||||||    
T  13619799 ggctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaaca 13619719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 33914715 - 33914637
Alignment:
Q  106 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |||||||||||||    
T  33914715 ctatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaaca 33914637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 25919647 - 25919539
Alignment:
Q  77 tgatgacggaacatcatgtgttattt-tggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    |||||| ||| |||||| || ||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||| | || ||||||||||||    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtt 25919548  T
Q  176 tgaggaaca 184  Q
    |||||||||    
T  25919547 tgaggaaca 25919539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 1475441 - 1475357
Alignment:
Q  99 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    |||||||||||||||| ||||||||| ||||| |||||||| | |||||||||||| ||| ||||||| ||||||||||||||||    
T  1475441 attttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttgaggaa 1475357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 19219395 - 19219289
Alignment:
Q  76 ttgatgacggaacatcatgtgtta-ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 174  Q
    ||||||||| | |||||| || || |||| ||| |||||| |||| |||||||||  |||||||| ||||||||||||| |||| |||||||||||||||    
T  19219395 ttgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggt 19219296  T
Q  175 ttgagga 181  Q
    |||||||    
T  19219295 ttgagga 19219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 12573244 - 12573328
Alignment:
Q  99 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    ||||||| |||||||| ||||||||| ||||| ||| ||||||||||||||||||| ||| | || |||||||||||||||||||    
T  12573244 attttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 12573328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 13549708 - 13549792
Alignment:
Q  99 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    ||||||| |||||||| ||||||||| ||||| ||| ||||||||||||||||||| ||| | || |||||||||||||||||||    
T  13549708 attttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 13549792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 21017840 - 21017917
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||| |||| ||||||||| ||||||||| ||||||||||||| ||| |||||||| ||||  |||||||||||    
T  21017840 tatgtttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaaca 21017917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 10341763 - 10341836
Alignment:
Q  111 ttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaa 185  Q
    |||| ||||||||||| || |||||||  ||||||||||| |||||| ||||||||||||||| |||||||||||    
T  10341763 tttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatgg-ttgaggaacaa 10341836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 13911227 - 13911305
Alignment:
Q  106 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||| |||| ||||||||| |||||||||||| ||||  ||||  || | ||||||||||||||||||||||||    
T  13911227 ctatgtttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaaca 13911305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 10303427 - 10303504
Alignment:
Q  111 ttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaagta 188  Q
    |||| ||||||||||| |  |||||||  ||||||||||| |||||| ||||||||||||||||||||| || |||||    
T  10303427 tttttagtacttttctctacatttgaaatcaaataagatgtgaattagaggagttgtcaatggtttgagaaaaaagta 10303504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 8402684 - 8402624
Alignment:
Q  125 ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaa 185  Q
    ||||| |||||||| |||||||||||  | ||| |||||||||||||||||||||||||||    
T  8402684 ctttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaacaa 8402624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 11521117 - 11521180
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||| ||| ||||||||| ||||||||||||  ||  ||||||||||||||||||||||||||    
T  11521117 ttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaaca 11521180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 25883033 - 25883143
Alignment:
Q  75 attgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatgg 173  Q
    ||||||||| || |||||| || || ||||||||| |||  ||||||||| | ||| ||||||||| ||||||||||||| | | | |||||||||||      
T  25883033 attgatgacagagcatcatatgatactttggctatatttctagtactttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattt 25883132  T
Q  174 tttgaggaaca 184  Q
    |||||||||||    
T  25883133 tttgaggaaca 25883143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 17637034 - 17637131
Alignment:
Q  76 ttgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatg 172  Q
    ||||||||||| |||||| ||  ||||| ||||||||||  | |||||||||||| | || |||||||||||||| ||||| | ||||||||| ||||    
T  17637034 ttgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttgtaaatg 17637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 2729733 - 2729693
Alignment:
Q  144 taagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  2729733 taagatgagaattataggagttgtcaatggttcaaggaaca 2729693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 12409413 - 12409498
Alignment:
Q  99 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||| |||| |||| ||||||||| |||| ||||||||| ||||||  || ||  || | |||||||||||||||||| |||||    
T  12409413 attttgactatatttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaaca 12409498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 25188691 - 25188796
Alignment:
Q  78 gatgacggaacatcatgtgttattttggctatgttttaagt-acttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 176  Q
    ||||||||| |||||| || ||||| |||||| |||| | | | ||||||||| |||||||||||||||||| |  | ||| |||| ||| |||||||||    
T  25188691 gatgacggatcatcatatgatatttaggctatatttttacttatttttctttgcatttgaagacaaataagaggtcatttagaggaattgacaatggttt 25188790  T
Q  177 gaggaa 182  Q
    | ||||    
T  25188791 gtggaa 25188796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 29544475 - 29544559
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||| | || ||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  29544475 ttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaaca 29544559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 22067967 - 22067881
Alignment:
Q  99 attttggctatgttttaagtacttttc-tttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||||||||||| |||| ||||  |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  22067967 attttggctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaaca 22067881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 20470969 - 20470885
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||| |||||| ||||||||| |||  || |||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  20470969 ttttggctttgtttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtttgaggaaca 20470885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 20446171 - 20446271
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    ||||||| || || ||| || |||||| |||||||||| | ||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  20446171 tgatgacagagcaacatatgatattttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtt 20446270  T
Q  176 t 176  Q
    |    
T  20446271 t 20446271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 7142054 - 7142138
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||| | || ||||||||| |||| |||||||||||| |||||   ||| |||||||||||||||| |||||||    
T  7142054 ttttggctatgtttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggtttaaggaaca 7142138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 7815267 - 7815355
Alignment:
Q  89 atcatgtgttattttggctatgttttaagtacttttct-ttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 176  Q
    ||||| || |||||||| |||||||| ||||||||| | ||| ||||||||| ||||||||||||| ||| |||| |||||||||||||    
T  7815267 atcatatgatattttggttatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggttt 7815355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 315129 - 315219
Alignment:
Q  89 atcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttga 178  Q
    ||||| || ||||||| |||||||||  |||||||| |||   ||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  315129 atcatatgatattttgactatgttttcggtactttttcttaatatttgaagaaaaataagatgagagttagaggagttgtcaatggtttga 315219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 1255340 - 1255290
Alignment:
Q  132 tttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaa 1255290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 23124863 - 23124940
Alignment:
Q  106 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||| |||||||| ||||  ||||||||||||||||||||||| ||| ||||||||| | |||| |||||||||    
T  23124863 ctatgtttttagtacttt-ctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaaca 23124940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 21471729 - 21471825
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatg 172  Q
    ||||||| || |||||| ||  ||||||| |||||||| ||||||||| | ||| ||||||||||||||||||||| | ||| |||| |||||||||    
T  21471729 tgatgacagagcatcatatgccattttggttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatg 21471825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 19140133 - 19140085
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataaga 148  Q
    |||||||||||||||||||  ||||||||| ||||||||||||| ||||    
T  19140133 ttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 19140085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 20739532 - 20739484
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataaga 148  Q
    |||||||||||||||||||  ||||||||| ||||||||||||| ||||    
T  20739532 ttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 20739484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 21545957 - 21545874
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||| ||||||||| |||||||||||||    ||||||||||  ||||||| ||||| |  |||||||||||||||||||||||    
T  21545957 ttttgactatgtttttagtacttttcttttccattgaagacaac-aagatgataattaaataagttgtcaatggtttgaggaaca 21545874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 7494667 - 7494751
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||  ||| |||||||||||||| | ||||||||||| | | |||||  || |  |||||| ||||||||||||||||    
T  7494667 ttttggctattcttttagtacttttctttgcacttgaagacaaacaggttgagagataaaatagttgttaatggtttgaggaaca 7494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 9385463 - 9385527
Alignment:
Q  119 acttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaac 183  Q
    ||||||| ||| |||||||||||| ||||||||||  ||  |||||||| |||||||||| ||||    
T  9385463 acttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaac 9385527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 46054675 - 46054739
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaa 185  Q
    |||| |||| |||||||| |||||||||||  | ||| ||||||||||| || ||||||||||||    
T  46054675 ttttttttgtatttgaaggcaaataagatgtcatttaaaggagttgtcattgatttgaggaacaa 46054739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 23223367 - 23223451
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||||||||||||||||||||||||| ||||  |||||| ||||||| || ||| ||||||||||||||||||||||||||    
T  23223367 ttttggctatgttttaagtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaaca 23223451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 12424097 - 12423989
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    ||||||| || |||||| || ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||   | ||| ||||| |||||||    
T  12424097 tgatgacagagcatcatatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtt 12423998  T
Q  176 tgaggaaca 184  Q
    |||||||||    
T  12423997 tgaggaaca 12423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 50047110 - 50047221
Alignment:
Q  74 tattgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatg 172  Q
    |||||||||||||| | ||| || |||||| |||||||||||   |||||||||||| ||||||||||||||||||||| || || ||||||||||||||    
T  50047110 tattgatgacggaataccatatgatatttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatg 50047209  T
Q  173 gtttgaggaaca 184  Q
     |||||| ||||    
T  50047210 atttgagaaaca 50047221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 8247840 - 8247732
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtac-ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    ||||||| || |||||| ||  |||||| ||||||||| | ||| ||||||||| ||||||||||||||||||||||| ||| ||||| | |||||||||    
T  8247840 tgatgacagagcatcatatgacattttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtt 8247741  T
Q  176 tgaggaaca 184  Q
    |||||||||    
T  8247740 tgaggaaca 8247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 12810284 - 12810362
Alignment:
Q  106 ctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||| |||||||||||||  |||| |||||||||||| |||||  || ||||||||||||||||||||||||||    
T  12810284 ctatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaaca 12810362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 26657432 - 26657514
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    ||||| ||||||||| | |||||||||||| ||||||||||||||| | |||||  || ||||||||||||||||||||||||    
T  26657432 ttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaa 26657514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 30675439 - 30675524
Alignment:
Q  100 ttttggctatgttttaagtacttttctttgg-atttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| |||||||||| || ||||||||||   ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  30675439 tttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaaca 30675524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 21451976 - 21451900
Alignment:
Q  99 attttggctatgttttaagtac-ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 174  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||  || | ||||||||||||||    
T  21451976 attttggctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatggt 21451900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 24903433 - 24903370
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||| ||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  24903433 ttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaaca 24903370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 18301164 - 18301080
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaa--ataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    |||| ||||||||||  ||||||||||||| ||||||||||||  | || |||||| ||||||| ||||||||||||||||||||    
T  18301164 ttttagctatgtttttggtacttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttgaggaa 18301080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 25730729 - 25730649
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgagga 181  Q
    |||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||| ||| | ||||||||| |||||||    
T  25730729 tttttgctatgtttta-gtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgagga 25730649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 11770153 - 11770069
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||| ||||||||| | |||| ||||||| ||||||||| ||||||||||||| ||| || | ||||||||||||| |||||||    
T  11770153 ttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaaca 11770069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 30781703 - 30781783
Alignment:
Q  88 catcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgt 167  Q
    ||||||| | |||||| |||||||||| |||| |||| ||||| ||||||||||||||||||||||| ||| |||||||||    
T  30781703 catcatgcgatatttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgt 30781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 18795122 - 18795221
Alignment:
Q  86 aacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||| |||||| ||||||||||  |||  ||||||||| ||||||||  |||||||| |  | ||| |||| || ||||||||||||||||||    
T  18795122 aacatcatgtgatattttaggctatgtttctagtgattttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaaca 18795221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 25266503 - 25266430
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggt 174  Q
    |||||| |||||||| |||||||||||||| ||||||||||| | ||||| |||  || || |||||||||||||    
T  25266503 ttttggttatgtttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggt 25266430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 23519903 - 23519830
Alignment:
Q  111 ttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| ||||||||||||||  |||||||||||||| |||||||  || |  |||||| ||| ||||||||||||    
T  23519903 tttttagtacttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatagtttgaggaaca 23519830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 34381671 - 34381748
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||| | || |||| |||| |||||||| |||||||||||  | ||| ||||||||| |||||||||| |||||    
T  34381671 tatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaaca 34381748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 18391046 - 18391122
Alignment:
Q  108 atgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||| |||  |||||| || |||| |||||||||||||||  | ||| || |||||||||||||||||| ||||    
T  18391046 atgtttttagttattttctgtgtatttaaagacaaataagatgtcatttaaagaagttgtcaatggtttgagtaaca 18391122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 25494598 - 25494554
Alignment:
Q  140 caaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||| ||||| | ||| ||||||||||||||||||||||||||    
T  25494598 caaataggatgaaagttagaggagttgtcaatggtttgaggaaca 25494554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 5906881 - 5906795
Alignment:
Q  98 tattttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||| |||||||||| ||||||||| |||| ||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  5906881 tatttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaaca 5906795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 34864443 - 34864367
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaac 183  Q
    |||||||| |||||||||||||| ||||||||||||||||||| | | ||| |||||||||||||||||||||||||    
T  34864443 tatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaac 34864367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 12111482 - 12111407
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||| ||||||||| |||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  12111482 tatgtttttagtacttttatttgcatttgaagacaaa-aagatgagaat-agaggagttgtcaatggtttgaggaaca 12111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 1676454 - 1676370
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||| ||| ||||  ||||||||||||  ||||||||||||||||||||| |  || ||||||||||||||||||||||||||    
T  1676454 ttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaaca 1676370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 1682982 - 1682898
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||| ||| ||||  ||||||||||||  ||||||||||||||||||||| |  || ||||||||||||||||||||||||||    
T  1682982 ttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaaca 1682898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 25315418 - 25315306
Alignment:
Q  73 atattgatgacggaacatcatgtgttattttggctatgtttta-agtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaat 171  Q
    ||||||||||| || |||||| ||  ||||| | ||||||||  |||||||||||||  ||||||||| |||||||||||||  || |||||||||||||    
T  25315418 atattgatgaccgagcatcatatgacattttagttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaat 25315319  T
Q  172 ggtttgaggaaca 184  Q
    | |||||||||||    
T  25315318 gctttgaggaaca 25315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 9783165 - 9783058
Alignment:
Q  78 gatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 176  Q
    |||||| || |||||| ||  |||||| ||||||||| ||||||||| ||||  |||||||| ||||| |||||||| ||| ||||||||||||| ||||    
T  9783165 gatgacagagcatcatatgacattttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagttt 9783066  T
Q  177 gaggaaca 184  Q
    ||||||||    
T  9783065 gaggaaca 9783058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 1696726 - 1696652
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 176  Q
    |||||||||| |||  ||||||||| |||  |||||||||||||||||||||||  |||||||||||||||||||||    
T  1696726 ttttggctatattt--agtacttttatttacatttgaagacaaataagatgagagatataggagttgtcaatggttt 1696652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 22119586 - 22119687
Alignment:
Q  85 gaacatcatgtgttattttg-gctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaac 183  Q
    ||||||||| || ||||||  |||||||||| |||  ||||||||| |||||||| ||||| ||| |  | |||||||||||||||||||||||||||||    
T  22119586 gaacatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaac 22119685  T
Q  184 aa 185  Q
    ||    
T  22119686 aa 22119687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 18897947 - 18898031
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||||||| |||||| | |||||||||||| ||||||||||||||||| |||||  || | || ||||||||||||| |||||||    
T  18897947 ttttggctgtgtttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaaca 18898031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 25050224 - 25050141
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaac 183  Q
    ||||||||||||||| |||| |||| |||| ||||||||||||||||||||| | ||| || | || |||| ||||||||||||    
T  25050224 ttttggctatgtttttagtatttttatttgtatttgaagacaaataagatgaaagttagagaaattatcaacggtttgaggaac 25050141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 4953654 - 4953722
Alignment:
Q  116 agtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| ||||||||| ||||||||| |||||||||| ||  || ||||||||| ||||||||||||||||    
T  4953654 agtatttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaaca 4953722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 15192166 - 15192212
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgaga 153  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||    
T  15192166 tatgtttttcgtacttttctttgcatttgaagacaaataagatgaga 15192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 5125581 - 5125629
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtca 169  Q
    |||| |||| ||||||||||||||||||||||||||| |||| ||||||    
T  5125581 ttttttttgcatttgaagacaaataagatgagaattagaggaattgtca 5125629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 27302755 - 27302818
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||| ||| ||||||||||||||| ||||| |  || || |||||||||||||||||||||||    
T  27302755 ttttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaaca 27302818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 31860039 - 31859955
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||| |||  |||| |||| ||||||||| |||||| | |  | ||| || |||||||||| ||||||||||||    
T  31860039 ttttggctatgtttttagttattttttttgcatttgaagaaaaataaaaggttatttagagaagttgtcaattgtttgaggaaca 31859955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 6152 - 6236
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||||||| |||||||||||||  |||| || ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  6152 ttttggctatgtttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaaca 6236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 15574857 - 15574964
Alignment:
Q  77 tgatgacggaacatcatgtgttattttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    ||||||| ||||||||| ||  ||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||| ||| |||| |||||||| |||    
T  15574857 tgatgacagaacatcatatgacattttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaat-gtt 15574955  T
Q  176 tgaggaaca 184  Q
    |||||||||    
T  15574956 tgaggaaca 15574964  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 15576321 - 15576254
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgt 167  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||| |||||||||    
T  15576321 ttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgt 15576254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 30355260 - 30355360
Alignment:
Q  79 atgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttg 177  Q
    |||||||| |||||| || |||||| ||||||||||| |||||||||  ||| ||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  30355260 atgacggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttg 30355359  T
Q  178 a 178  Q
    |    
T  30355360 a 30355360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 13759589 - 13759526
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| |||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  13759589 ttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaca 13759526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 14924572 - 14924491
Alignment:
Q  104 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaacaa 185  Q
    ||||||||||| |||  ||||||||| |||||||| ||||||| |||  | ||| |||||||||||||||||||||||||||    
T  14924572 ggctatgtttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaacaa 14924491  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 16527852 - 16527925
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgag 179  Q
    ||||||||||||||| ||||||||||||||      |||||||||||||||||| ||| ||||||||||  |||||||||    
T  16527852 ttttggctatgtttttagtacttttctttg------aagacaaataagatgagagttagaggagttgtcggtggtttgag 16527925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 16387400 - 16387325
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaa 182  Q
    |||||||| |||| |||||||||  ||||||||| |||||||||  | ||| | ||||||||||||||||||||||    
T  16387400 tatgtttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaa 16387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 32930610 - 32930547
Alignment:
Q  121 ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    |||| |||| |||||||| |||||||||||  | ||| ||||||||||||||||||| ||||||    
T  32930610 ttttttttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaaca 32930547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 15998444 - 15998549
Alignment:
Q  78 gatgacggaacatcatgtgttattttggctatgttttaagtac-ttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggttt 176  Q
    |||||| || |||||| ||  ||||||||||||||||  |||| ||||||||| ||||||||  |||| | |||||| ||| ||||||  || |||||||    
T  15998444 gatgacagatcatcatatgacattttggctatgttttttgtacgttttctttgcatttgaaggaaaatgatatgagagttagaggagtgttccatggttt 15998543  T
Q  177 gaggaa 182  Q
    ||||||    
T  15998544 gaggaa 15998549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 12972543 - 12972471
Alignment:
Q  100 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatg 172  Q
    ||||||||||||||| |||  ||||||||| |||||||| ||| ||||| |  | ||| ||||||||||||||    
T  12972543 ttttggctatgtttttagttattttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatg 12972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 20495948 - 20495868
Alignment:
Q  104 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttgaggaaca 184  Q
    ||||||||||| |||| ||||||||| |||||||| ||| ||||| |  |  || || |||| ||||||||||||||||||    
T  20495948 ggctatgtttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatggtttgaggaaca 20495868  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 446936 - 447014
Alignment:
Q  76 ttgatgacggaacatcatgtgttattttggctatgttttaagtacttttc-tttggatttgaagacaaataagatgaga 153  Q
    |||||||| || |||||| || |||||| |||||||||| |||||||||| |||  |||||||||||||||||||||||    
T  446936 ttgatgacagagcatcatatgatatttttgctatgtttttagtacttttcctttacatttgaagacaaataagatgaga 447014  T

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Target: scaffold0188 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 27109 - 27032
Alignment:
Q  104 ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaa-ttataggagttgtcaatggtttgagga 181  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||| |||| ||| | |||||||| |||| |||||||    
T  27109 ggctatgtttttagtacttttctttgcatttgaagataaataagat-agaagttacaagagttgtctatggattgagga 27032  T

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Target: scaffold0386 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 8892 - 8787
Alignment:
Q  77 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtt 175  Q
    |||||| |||||||||| || |||||| || ||| |||| ||||||||| |||  |||| |||| ||||||||||||  ||| |||| ||||||||||||    
T  8892 tgatgatggaacatcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgagggttagaggatttgtcaatggtt 8793  T
Q  176 tgagga 181  Q
     |||||    
T  8792 agagga 8787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 13223 - 13153
Alignment:
Q  107 tatgttttaagtacttttctttggatttgaagacaaataagatgagaattataggagttgtcaatggtttg 177  Q
    |||||||| ||||||||| |||  || | |||||||||||||||||| ||| |||| || |||||||||||    
T  13223 tatgtttttagtacttttattttcatattaagacaaataagatgagagttagaggatttttcaatggtttg 13153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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