View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_high_78 (Length: 205)

Name: NF5176_high_78
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_high_78
NF5176_high_78
[»] chr5 (6 HSPs)
chr5 (1-189)||(30072420-30072608)
chr5 (93-178)||(18452460-18452545)
chr5 (90-189)||(17028654-17028753)
chr5 (99-172)||(25594298-25594371)
chr5 (105-164)||(26329705-26329764)
chr5 (138-178)||(12265240-12265280)
[»] chr3 (3 HSPs)
chr3 (112-188)||(10342165-10342241)
chr3 (138-189)||(19218821-19218872)
chr3 (99-157)||(2729243-2729302)
[»] chr8 (3 HSPs)
chr8 (93-189)||(23893494-23893591)
chr8 (138-189)||(15213380-15213431)
chr8 (112-164)||(16051952-16052004)
[»] chr2 (3 HSPs)
chr2 (112-189)||(21844450-21844527)
chr2 (112-186)||(21842826-21842900)
chr2 (131-176)||(21504219-21504264)
[»] chr6 (1 HSPs)
chr6 (88-175)||(19670255-19670342)
[»] chr7 (2 HSPs)
chr7 (138-188)||(26839798-26839848)
chr7 (100-189)||(21545480-21545568)
[»] chr4 (5 HSPs)
chr4 (113-189)||(12110953-12111029)
chr4 (113-176)||(5676646-5676709)
chr4 (138-189)||(15192667-15192718)
chr4 (99-189)||(34863886-34863976)
chr4 (144-172)||(25314884-25314912)
[»] chr1 (2 HSPs)
chr1 (132-176)||(25726304-25726348)
chr1 (132-176)||(25734712-25734756)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 5e-98; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 30072420 - 30072608
Alignment:
Q  1 acgcaagatttcacacacagggactgtctcatgtgccactatcgcatgaggcagtgttaccactgccccaggcgtctcctgcacacgactgtgggcataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  30072420 acgcaagatttcacacacagggactgtctcatgtgccactatcgcatgaggcagtgttaccactgccccaggcgcctcatgcacacgactgtgggcataa 30072519  T
Q  101 attgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072520 attgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 30072608  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 18452545 - 18452460
Alignment:
Q  93 gggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcattt 178  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||| |||||||    
T  18452545 gggcataaattgtctgcagcttgtttttcaagctaaaacggtggaaaaagccaaattttcttctcttaaaccttaagtgatcattt 18452460  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 17028654 - 17028753
Alignment:
Q  90 tgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    |||||||| ||||||||||||  ||  ||||||||  ||||  |||| |||| |  ||||||||||||||||||| |||||||||||||  |||||||||    
T  17028654 tgtgggcagaaattgcctgcagtttagttttcaagtcaaaattgtggaaaaaacctagttttcttctcttaaaccctaagtaatcattttctataaatag 17028753  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 25594371 - 25594298
Alignment:
Q  99 aaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaa 172  Q
    |||||||| | | ||||||||||||| | ||||||||| ||| || || ||||||||||||||||| |||||||    
T  25594371 aaattgcccgtagcttgtttttcaagatgaaacggtggaaaaggcccacttttcttctcttaaaccctaagtaa 25594298  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 26329764 - 26329705
Alignment:
Q  105 cctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaacc 164  Q
    ||||||||||||||| ||||||  | |||||  |||||||||||||||||||| ||||||    
T  26329764 cctgcaacttgttttccaagctggatcggtgcaaaaagctcagttttcttctcctaaacc 26329705  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 12265280 - 12265240
Alignment:
Q  138 aaaagctcagttttcttctcttaaaccttaagtaatcattt 178  Q
    |||| |||||||||||||| |||||||||||||||| ||||    
T  12265280 aaaatctcagttttcttcttttaaaccttaagtaattattt 12265240  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 10342165 - 10342241
Alignment:
Q  112 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaata 188  Q
    |||||||||| |||||||||||||| |||| || ||||||||||||||||||| |||||||||||||| ||||||||    
T  10342165 cttgtttttctagctaaaacggtggaaaaaacttagttttcttctcttaaaccctaagtaatcatttactataaata 10342241  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 19218872 - 19218821
Alignment:
Q  138 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    |||||| |||||||||||||||||||||||||||||||| |  |||||||||    
T  19218872 aaaagcccagttttcttctcttaaaccttaagtaatcatattctataaatag 19218821  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 2729302 - 2729243
Alignment:
Q  99 aaattgcctgcaacttgtttttcaagctaaaacggtgg-taaaagctcagttttcttctc 157  Q
    |||||||||||||||| |||||||||||||||| ||||  |||||| || ||||||||||    
T  2729302 aaattgcctgcaacttatttttcaagctaaaacagtggaaaaaagcacatttttcttctc 2729243  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 23893494 - 23893591
Alignment:
Q  93 gggcataaattgcctgcaacttgttttt-caagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    ||||| |||||| ||||||||||||||| ||||| |||| ||||| |||| || ||||||||||||||||||  |||||||| |||| ||||||||||    
T  23893494 gggcaaaaattgtctgcaacttgttttttcaagccaaaagggtggaaaaaactgagttttcttctcttaaactctaagtaattattttatataaatag 23893591  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 15213431 - 15213380
Alignment:
Q  138 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    |||||||||||||||||||||| |||| ||||||||||| |  |||||||||    
T  15213431 aaaagctcagttttcttctcttcaaccataagtaatcatatgctataaatag 15213380  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 16052004 - 16051952
Alignment:
Q  112 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaacc 164  Q
    |||||||||||||||  | |||||| |||| || |||||||||||||||||||    
T  16052004 cttgtttttcaagctggatcggtggaaaaaacttagttttcttctcttaaacc 16051952  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 21844527 - 21844450
Alignment:
Q  112 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    ||||||||||||| || | |||||| |||| | |||||||||||||||||||| |||||||| ||| |||||||||||    
T  21844527 cttgtttttcaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtaataattcaatataaatag 21844450  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 21842900 - 21842826
Alignment:
Q  112 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaa 186  Q
    ||||||||||||| || | |||||| |||| | |||||||||||||||||||| |||||||| ||| ||||||||    
T  21842900 cttgtttttcaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtaataattcaatataaa 21842826  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 21504264 - 21504219
Alignment:
Q  131 cggtggtaaaagctcagttttcttctcttaaaccttaagtaatcat 176  Q
    |||||| ||||||||||||||||||||||||| |  ||||||||||    
T  21504264 cggtggaaaaagctcagttttcttctcttaaatccgaagtaatcat 21504219  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 19670342 - 19670255
Alignment:
Q  88 actgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatca 175  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||| ||  || || ||||| || |||||| | ||||||||||    
T  19670342 actgtggacataaatttcctgcaacttctttttcaagctaaaacggtggaaatcgcccaattttcctcacttaaatcctaagtaatca 19670255  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 26839848 - 26839798
Alignment:
Q  138 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaata 188  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  26839848 aaaagctcagttttcttctcttaaaccctaagtaatcatttgctataaata 26839798  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 21545568 - 21545480
Alignment:
Q  100 aattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    |||||||  |||||||||||||||||||| ||||||| |||  | || |||||||||||||| || |||||||||||||  |||||||||    
T  21545568 aattgcccacaacttgtttttcaagctaacacggtggaaaattc-caattttcttctcttaacccctaagtaatcattttctataaatag 21545480  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 12111029 - 12110953
Alignment:
Q  113 ttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    |||||| |||||||| | |||||  |||  |||| ||||||||||||||||| |||| |||||||||||||||||||    
T  12111029 ttgtttctcaagctagatcggtgcaaaattctcaattttcttctcttaaaccctaagaaatcatttaatataaatag 12110953  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 5676646 - 5676709
Alignment:
Q  113 ttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcat 176  Q
    |||||||||||| | || |||||| |||||  |||||||||||||||||||| |||||||||||    
T  5676646 ttgtttttcaagttgaagcggtggaaaaagtccagttttcttctcttaaaccctaagtaatcat 5676709  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 15192667 - 15192718
Alignment:
Q  138 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    ||||||||||||||||||||||||||  |||||||||||||  |||||||||    
T  15192667 aaaagctcagttttcttctcttaaactctaagtaatcattttctataaatag 15192718  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 34863976 - 34863886
Alignment:
Q  99 aaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 189  Q
    ||||||| |||| |||||||||||||||  | || ||  |||| ||||||||||| |||||||||| | |||||||||||  |||||||||    
T  34863976 aaattgcatgcagcttgtttttcaagctggatcgatgcaaaaaactcagttttctactcttaaaccctgagtaatcatttgctataaatag 34863886  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 25314912 - 25314884
Alignment:
Q  144 tcagttttcttctcttaaaccttaagtaa 172  Q
    |||||||||||||||||||||||||||||    
T  25314912 tcagttttcttctcttaaaccttaagtaa 25314884  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 25726348 - 25726304
Alignment:
Q  132 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcat 176  Q
    ||||| |||| ||| |||||||||||||||||| |||||||||||    
T  25726348 ggtggaaaaaactctgttttcttctcttaaaccctaagtaatcat 25726304  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 25734756 - 25734712
Alignment:
Q  132 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcat 176  Q
    ||||| |||| ||| |||||||||||||||||| |||||||||||    
T  25734756 ggtggaaaaaactctgttttcttctcttaaaccctaagtaatcat 25734712  T

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