View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_high_8 (Length: 545)
Name: NF5176_high_8
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 212 - 527
Target Start/End: Original strand, 56316958 - 56317273
Alignment:
| Q |
212 |
aaatttggaaaatgtatcaagtgaaaatcaagcgaagacatttcaagatggaattacatacacaagaatattttcttaatgtttctcataacctcttgaa |
311 |
Q |
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| T |
56316958 |
aaatttggaaaatgtatcaagtgaaaatcaagcgaagacatttcaagatggaattacatacacaagaatattttcttaatgtttctcataacctcttgaa |
56317057 |
T |
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| Q |
312 |
gtttaaaagggaccctaatatggacctcataaaataatcgaaatgcatgtggacttgctaatgctagggtataaaaaatattgaagtcatacactctcgg |
411 |
Q |
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| T |
56317058 |
gtttaaaagaaaccctaatatggacctcataaaataatcgaaatgcatgtggacttgctaatgctagggtataaaaaatattgaagtcatacactctcgg |
56317157 |
T |
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| Q |
412 |
ccaatatcttaggtgcttatggctgaaactaggtaaatattttagtaattttaaagataaaactaggtaagttacttcaaatctgcacctaaagtagaca |
511 |
Q |
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| T |
56317158 |
ccaatatcttaggtgcttatggctgaaactaggtaaatattttagtaattttaaagataaaactaggtaagttacttcaaatctgcacctaaagtagaca |
56317257 |
T |
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| Q |
512 |
ctaacattgtgtgatt |
527 |
Q |
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| T |
56317258 |
ttaacattgtgtgatt |
56317273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 56316721 - 56316922
Alignment:
| Q |
9 |
gacatcatcataagtaaaattaaattgaaatgcaaacaaaataagattacatttacattttttctaaggcaagattacatttacatataannnnnnnnnn |
108 |
Q |
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| T |
56316721 |
gacatcatcataattaaaatgaaattgaaatgcaaacaaaataagattacatttacattttttctatggcaagattacatttacatataatgtttttctt |
56316820 |
T |
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| Q |
109 |
nnnnngactaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcc |
208 |
Q |
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| T |
56316821 |
tttttgacaaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcc |
56316920 |
T |
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| Q |
209 |
tc |
210 |
Q |
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| T |
56316921 |
tc |
56316922 |
T |
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