View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5176_low_11 (Length: 448)
Name: NF5176_low_11
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 25922096 - 25922298
Alignment:
| Q |
1 |
agagataacaataaccagggaagtgacattacctaatattcggtaataacctacatgaaccaagtaataacttatataactgtttaaccacccaaattag |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25922096 |
agagataacaataactagggaagtgacataacctaatattcgataataacctacatgaaccaagtaataacttatataactgtttaaccacccgaattag |
25922195 |
T |
|
| Q |
101 |
ggaaataatagtaataatggtaactgaacctaggaactagcgtaataactataatcttcttacatctttgataaggtaggggatatatggcttcctgttt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25922196 |
ggaaataatagtaataatggtaattgaacctaggaactagcataataactataatcttcttacatccttggtaaggtaggggatatatggcttcttgttt |
25922295 |
T |
|
| Q |
201 |
gta |
203 |
Q |
| |
|
||| |
|
|
| T |
25922296 |
gta |
25922298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 25922714 - 25922817
Alignment:
| Q |
240 |
gaatagatgagattctaaaaatcttaacaaccactaacattttacaatcataaatatgttcctcctaaactcttgctctgagcaaatggatcaaattgca |
339 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25922714 |
gaataaatgagattctaaaaatcttaacagccgctaacattttgcaatcataaacatgttactcctaaactcttgctctgagcaaatagatcaaattgca |
25922813 |
T |
|
| Q |
340 |
caac |
343 |
Q |
| |
|
|||| |
|
|
| T |
25922814 |
caac |
25922817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 25922856 - 25922898
Alignment:
| Q |
389 |
gttataaataaattacacgaactgactagttggaataacaatc |
431 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
25922856 |
gttataaataaattacacgaattggctagttggaataacaatc |
25922898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 8986792 - 8986716
Alignment:
| Q |
90 |
acccaaattagggaaataatagtaataatggtaactgaacctaggaactagcgtaataactataatcttcttacatc |
166 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
8986792 |
acccgaattagggaaataatagtaacaacggtaagtgaacctaggaactagcataataactttactcttcctacatc |
8986716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 8446461 - 8446560
Alignment:
| Q |
76 |
ataactgtttaaccacccaaattagggaaataatagtaataatggtaactgaacctaggaactagcgtaataactataatcttcttacatctttgataag |
175 |
Q |
| |
|
|||||||| | ||||| | |||||| ||||| |||||| || ||||||||||||||||||||||| |||||| | || |||||||||||| ||| |||| |
|
|
| T |
8446461 |
ataactgtgtcaccactcgaattagaaaaatagtagtaacaacggtaactgaacctaggaactagcataataattttactcttcttacatcattggtaag |
8446560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 29883483 - 29883408
Alignment:
| Q |
240 |
gaatagatgagattctaaaaatcttaacaaccactaacattttacaatcataaatatgttcctcctaaactcttgct |
316 |
Q |
| |
|
||||||||||||||| || |||| |||| ||| ||||||||| |||||| ||| | ||| |||||||||||||||| |
|
|
| T |
29883483 |
gaatagatgagattcgaagaatcctaaccgccattaacattttgcaatca-aaacaggttactcctaaactcttgct |
29883408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 33655262 - 33655393
Alignment:
| Q |
48 |
aacctacatgaaccaagtaataacttatataactgtttaaccacccaaattagggaaataatagtaataatggtaactgaacctaggaactagcgtaata |
147 |
Q |
| |
|
||||||||||| || | | ||||| | ||||| || |||||||| |||| ||| ||||||| ||| || |||||| |||||||||||||| || ||| |
|
|
| T |
33655262 |
aacctacatgactcatgaagtaactaagataacggtgtaaccaccttaattgggggaataatactaacaacagtaactaaacctaggaactagtgtgata |
33655361 |
T |
|
| Q |
148 |
actataatcttcttacatctttgataaggtag |
179 |
Q |
| |
|
||| || |||||||| ||||||| |||||||| |
|
|
| T |
33655362 |
actttactcttcttatatctttgctaaggtag |
33655393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University