View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5176_low_13 (Length: 446)
Name: NF5176_low_13
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 3 - 445
Target Start/End: Complemental strand, 12310449 - 12310008
Alignment:
| Q |
3 |
tactaaggaatatacaagaggaattttattttgttaactaaaaagtataacctcatattttctcaagaatccattacttttgagcctgcgtatgtttttc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12310449 |
tactaaggaatatacaagaggaattttattttgttaactaaaaagtataacttcatattttctcaagaatccattacttttgagcctgcatatgtttttc |
12310350 |
T |
|
| Q |
103 |
attatttcctttgtaccactgagttttagtctaaagctacaaatttaagttttcaatcaccctgacattgttattcactatttaattgttaaatatggta |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12310349 |
attatttcctttgtaccactgagttt-agtctaaagctacaaatttaagttttcactcaccctgacattgttcttcactatttaattgttaaatatggta |
12310251 |
T |
|
| Q |
203 |
gaataattcttaacacacattgaagtcaagatattggaaattggaataaaaccaaggcctccccaaatagtatttttcagtaagctccctgatagtatat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12310250 |
gaataattcttaacacacattgaagtcaagatattggaaattggaataaaaccaaggcctccttaaatagtatttttcagtaagctccctgatagtatat |
12310151 |
T |
|
| Q |
303 |
ttacataaatgatgctttttagagcttcattctgatttcactgttgacagatttatggagacatttgattaaaagttggtaagatgacaacaagtcaatt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12310150 |
ttacataaatgatgctttttagagcttcattctgatttcactgttgacagatttatggagacatttgattaaaagttggtaagatgacaacaagtcaatt |
12310051 |
T |
|
| Q |
403 |
cctccacaaggacacatggtatcaaaacaaaaatcctaagaaa |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12310050 |
cctccacaaggacacatggtatcaaaacaaaattcctaagaaa |
12310008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University