View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_14 (Length: 440)
Name: NF5176_low_14
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 24366513 - 24366154
Alignment:
| Q |
13 |
aatattagaatttggtagtgaaattacaggaggtcatttattcttgtaactatttaatgtataatacattttgtatgattagattatttatctaatctag |
112 |
Q |
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| T |
24366513 |
aatattagaatttggtagtgaaattacaggaagtcatttattcttgtaactatttaatgtataatacattttgtatgattagattatttatctaatctag |
24366414 |
T |
|
| Q |
113 |
tcatgcccgtgtcttgtttatcactcattgggctcataccctcgtatctaagttctannnnnnnnnnnnnnnnnnnnnnnnngaattgtgaaagtcataa |
212 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
24366413 |
tcttgcccgtgtcttgtttatcactcattgggttcataccctcgtatctaagttctatttttatttttattttttactttttgaatggtgaaagtcataa |
24366314 |
T |
|
| Q |
213 |
ttgttggttaggttagtatgttagcatggagcgggttcgaccttacattcgtatgcctccaaccctttatgcccacaccccagcctcctcatcacattca |
312 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24366313 |
ttgttggttgggttagtatgttagcatggatcgggttcgaccttacattcgtatgcctccaaccctttatgcccacaccccagcctcc---tcacattca |
24366217 |
T |
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| Q |
313 |
acatctgtgagtgtctaataacttcttaatagctgatattgcttataaaaaagtcttctgaat |
375 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24366216 |
acatctgtgagtgtctaataccttcttaatagctgatattgcttataaaaaagtcttctgaat |
24366154 |
T |
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