View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_15 (Length: 406)

Name: NF5176_low_15
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_15
NF5176_low_15
[»] chr6 (6 HSPs)
chr6 (12-405)||(8816897-8817276)
chr6 (130-196)||(8420325-8420391)
chr6 (241-387)||(8420536-8420680)
chr6 (12-90)||(8419870-8419948)
chr6 (197-236)||(8596715-8596754)
chr6 (164-196)||(4247238-4247270)
[»] chr1 (1 HSPs)
chr1 (161-196)||(16322726-16322761)
[»] chr5 (2 HSPs)
chr5 (130-159)||(3951530-3951559)
chr5 (164-196)||(17777700-17777732)
[»] chr4 (2 HSPs)
chr4 (130-159)||(8469505-8469534)
chr4 (164-196)||(21043368-21043400)
[»] chr3 (1 HSPs)
chr3 (164-196)||(37308219-37308251)
[»] chr2 (1 HSPs)
chr2 (130-158)||(28803634-28803662)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 8817276 - 8816897
Alignment:
Q  12 atgaagtgtcagtgctatgtataactttttggaagagaattgaacttttggaattgaattgttgttgaattttatgatataatgcaatgtggttagattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8817276 atgaagtgtcagtgctatgtataactttttggaagagaattgaacttttggaattgaattgttgttgaattttatgatataatgcaatgtggttagattt 8817177  T
Q  112 ttgttgttatagagtttgataagcacttatatgataagcatttatgcttttgtgctataagcacttaattaagttgtttacccaattttgagagtagttg 211  Q
    |||| ||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8817176 ttgtcgttatagagtttgataagca---------------tttatgcttttgtgctataagcacttaattaagttgtttacccaattttgagagtagttg 8817092  T
Q  212 ttggataagtcgtggttgttggaacttggaacaatggaacatgatgtatctgtattctgttttaatttgctatataa-nnnnnnnngaatttgaacctgg 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||          ||||||||||||     
T  8817091 ttggataagtcgtggttgttggaacttggaaaaatggaacatggtgtatctgtattctgttttaatttgctatataattttttttttaatttgaacctgt 8816992  T
Q  311 atattaaatatttaggtaatgcaatctgattagaatttgctaagagttttgcgaggtctagaatagttcttggataatttactgctgttggaatg 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  8816991 atattaaatatttaggtaatgcaatctgattagaatttgctaagagctttgcgaggtctagaatagttattggataatttaatgctgttggaatg 8816897  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 8420325 - 8420391
Alignment:
Q  130 ataagcacttatatgataagcatttatgcttttgtgctataagcacttaattaagttgtttacccaa 196  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||||||    
T  8420325 ataagcacttatatgataagcatatatgcctttatgctataagcatttaattaagctgtttacccaa 8420391  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 387
Target Start/End: Original strand, 8420536 - 8420680
Alignment:
Q  241 aacaatggaacatgatgtatctgtattctgttttaatttgctatataannnnnnnngaatttgaacctggatattaaatatttaggtaatgcaatctgat 340  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||||         ||||  ||||||  ||| |||||||||  ||||||||||||| |    
T  8420536 aacaatggaacatgatgtctctgtattatgttttagtttgctatata--cttttttgaataagaacctatata-taaatatttgagtaatgcaatctggt 8420632  T
Q  341 tagaatttgctaagagttttg-cgaggtctagaatagttcttggataa 387  Q
    |||||||||  ||| |||||| ||||||||| ||||||| ||||||||    
T  8420633 tagaatttgacaagtgttttgccgaggtctataatagttattggataa 8420680  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 8419870 - 8419948
Alignment:
Q  12 atgaagtgtcagtgctatgtataactttttggaagagaattgaacttttggaattgaattgttgttgaattttatgata 90  Q
    |||||||||||||||||| |||| |||||  ||||||||||| |||||| | ||  ||||||| |||||||||||||||    
T  8419870 atgaagtgtcagtgctatatatagcttttcagaagagaattgtactttttggatgaaattgtttttgaattttatgata 8419948  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 8596715 - 8596754
Alignment:
Q  197 ttttgagagtagttgttggataagtcgtggttgttggaac 236  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  8596715 ttttgagagtagttgttggataagtcatggttgttggaac 8596754  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 4247238 - 4247270
Alignment:
Q  164 tgctataagcacttaattaagttgtttacccaa 196  Q
    |||||||||||||||||||||||||||| ||||    
T  4247238 tgctataagcacttaattaagttgtttatccaa 4247270  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 16322761 - 16322726
Alignment:
Q  161 ttgtgctataagcacttaattaagttgtttacccaa 196  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16322761 ttgtgctataagcacttaattaagttgtttatccaa 16322726  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 3951559 - 3951530
Alignment:
Q  130 ataagcacttatatgataagcatttatgct 159  Q
    ||||||||||||||||||||||||||||||    
T  3951559 ataagcacttatatgataagcatttatgct 3951530  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 17777732 - 17777700
Alignment:
Q  164 tgctataagcacttaattaagttgtttacccaa 196  Q
    |||||||| ||||||||||||||||||||||||    
T  17777732 tgctataaacacttaattaagttgtttacccaa 17777700  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 8469505 - 8469534
Alignment:
Q  130 ataagcacttatatgataagcatttatgct 159  Q
    ||||||||||||||||||||||||||||||    
T  8469505 ataagcacttatatgataagcatttatgct 8469534  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 21043368 - 21043400
Alignment:
Q  164 tgctataagcacttaattaagttgtttacccaa 196  Q
    |||||||||||||| ||||||||||||||||||    
T  21043368 tgctataagcacttcattaagttgtttacccaa 21043400  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 37308219 - 37308251
Alignment:
Q  164 tgctataagcacttaattaagttgtttacccaa 196  Q
    |||||||||||||||||||||||||||| ||||    
T  37308219 tgctataagcacttaattaagttgtttatccaa 37308251  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 28803634 - 28803662
Alignment:
Q  130 ataagcacttatatgataagcatttatgc 158  Q
    |||||||||||||||||||||||||||||    
T  28803634 ataagcacttatatgataagcatttatgc 28803662  T

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