View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_21 (Length: 334)

Name: NF5176_low_21
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_21
NF5176_low_21
[»] chr6 (3 HSPs)
chr6 (10-316)||(5542343-5542649)
chr6 (33-118)||(14680336-14680421)
chr6 (10-118)||(15605899-15606007)
[»] chr1 (7 HSPs)
chr1 (10-118)||(5609513-5609621)
chr1 (18-70)||(4395380-4395432)
chr1 (34-133)||(51113474-51113573)
chr1 (33-86)||(23163357-23163410)
chr1 (33-118)||(44602926-44603011)
chr1 (10-70)||(25682873-25682933)
chr1 (34-118)||(48949653-48949737)
[»] chr3 (7 HSPs)
chr3 (19-120)||(49525108-49525209)
chr3 (10-68)||(26046912-26046970)
chr3 (34-118)||(27608832-27608916)
chr3 (33-72)||(2121301-2121340)
chr3 (36-118)||(42340208-42340290)
chr3 (18-70)||(34497285-34497337)
chr3 (34-70)||(55199733-55199769)
[»] scaffold0446 (1 HSPs)
scaffold0446 (18-118)||(364-464)
[»] chr4 (12 HSPs)
chr4 (18-118)||(56065807-56065907)
chr4 (13-130)||(51259437-51259554)
chr4 (18-118)||(49951487-49951587)
chr4 (18-118)||(51734885-51734985)
chr4 (20-127)||(29655581-29655688)
chr4 (19-118)||(37245766-37245865)
chr4 (33-70)||(28426405-28426442)
chr4 (33-70)||(32576976-32577013)
chr4 (18-133)||(33582849-33582961)
chr4 (34-127)||(44936011-44936104)
chr4 (33-70)||(49119328-49119365)
chr4 (34-118)||(41835240-41835324)
[»] chr8 (5 HSPs)
chr8 (19-70)||(13415245-13415296)
chr8 (20-118)||(477971-478069)
chr8 (18-103)||(8670227-8670312)
chr8 (19-127)||(7127388-7127496)
chr8 (33-70)||(11870486-11870523)
[»] chr7 (11 HSPs)
chr7 (19-118)||(16732107-16732206)
chr7 (19-118)||(17710241-17710340)
chr7 (10-103)||(6056282-6056375)
chr7 (33-118)||(9328530-9328615)
chr7 (18-70)||(24139233-24139285)
chr7 (18-70)||(24251661-24251713)
chr7 (10-70)||(28598135-28598195)
chr7 (18-70)||(44481309-44481361)
chr7 (19-118)||(29200869-29200968)
chr7 (33-127)||(30824422-30824516)
chr7 (18-118)||(22289415-22289515)
[»] chr2 (4 HSPs)
chr2 (33-118)||(9710129-9710214)
chr2 (18-70)||(34695817-34695869)
chr2 (18-70)||(34718229-34718281)
chr2 (18-98)||(88753-88833)
[»] chr5 (8 HSPs)
chr5 (10-70)||(20205177-20205237)
chr5 (34-130)||(26597386-26597482)
chr5 (33-118)||(31908324-31908409)
chr5 (10-62)||(4268329-4268381)
chr5 (34-70)||(8388308-8388344)
chr5 (10-70)||(22767178-22767238)
chr5 (34-70)||(23075054-23075090)
chr5 (18-70)||(25731030-25731082)
[»] scaffold0252 (1 HSPs)
scaffold0252 (18-120)||(13293-13393)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 5542649 - 5542343
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542649 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataat 5542550  T
Q  110 attagaaactatgacataaaactcagaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaaaaatcatctttctcca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542549 attagaaactatgacataaaactcagaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaaaaatcatctttctcca 5542450  T
Q  210 cccttgatgcatatccaaccaaccgaattgcttccatgaacgccaatgcttcatcctgaagaaccgtccactgagcatgtttccatgtcgtttgggctag 309  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5542449 cccttgatgcatatccaaccaaccgaattgcttccatgaacaccaatgcttcatcctgaagaaccgtccactgagcatgtttccacgtcgtttgggctag 5542350  T
Q  310 cacaaac 316  Q
    |||||||    
T  5542349 cacaaac 5542343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 14680421 - 14680336
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||||||||||||| |||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  14680421 gtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 14680336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 15605899 - 15606007
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataat 109  Q
    ||||||| ||||||||||| |  | |||||||||||||||||||||||  ||| |||| || |  || |||| ||||||| ||| ||||  | |||||||    
T  15605899 aagaataagccgccctagctaaagcatgagcaaccatgttcgcttgtctgctaacaaaattcacctcgaagttggaatgtaaagataactgataaataat 15605998  T
Q  110 attagaaac 118  Q
    | |||||||    
T  15605999 actagaaac 15606007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 5609621 - 5609513
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataat 109  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||    
T  5609621 aagaacatgccgccctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataat 5609522  T
Q  110 attagaaac 118  Q
    | |||||||    
T  5609521 actagaaac 5609513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 4395432 - 4395380
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  4395432 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 4395380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 51113573 - 51113474
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 133  Q
    ||||||||||||||||||||| || |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| ||  ||||||||||    
T  51113573 tatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttggaatgttaagataactgaaaaataatactagaaacaatagcataaaactc 51113474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 23163410 - 23163357
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaa 86  Q
    |||||||||||||||||||||||||  ||| |||||||||| || |||| ||||    
T  23163410 gtatgagcaaccatgttcgcttgtcttctaacaaactttatctcgaagttggaa 23163357  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 44603011 - 44602926
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||| |||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  44603011 gtatgagccaccatgttcgcttgtcccctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 44602926  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 25682933 - 25682873
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||| ||||| ||||||| |  ||||||||||||||| ||||||||| |||| |||||||    
T  25682933 aagaacatgcctccctagctaaagtatgagcaaccatgctcgcttgtctcctaacaaactt 25682873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 48949653 - 48949737
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||| ||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  48949653 tatgagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatactagaaac 48949737  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 49525108 - 49525209
Alignment:
Q  19 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    ||||||||||||| || |||||| |||||||||||||||||||| |||||||||  ||||| | ||||||| || |||| |||||  |||||  ||||||    
T  49525108 ccgccctagcaagggtgtgagcagccatgttcgcttgtcgcctaacaaactttacctcaaaattggaatgtaaaactaaaatagacttaataaaagaaac 49525207  T
Q  119 ta 120  Q
    ||    
T  49525208 ta 49525209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 26046970 - 26046912
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaac 68  Q
    ||||||| ||||||||||| |  ||||||||||||||||||||||||| |||| |||||    
T  26046970 aagaataagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaac 26046912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 27608832 - 27608916
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  27608832 tatgagcaaccatgttcgcttgtctcctaacaaacttcagctcgaagttggaatgtaaagataactgaaaaataatactagaaac 27608916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 2121340 - 2121301
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaacttta 72  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  2121340 gtatgagcaaccatgttcgcttgtctcctaacaaacttta 2121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 42340208 - 42340290
Alignment:
Q  36 tgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| || |  | ||||||||||||||||    
T  42340208 tgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagatagctgataaataatattagaaac 42340290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 34497285 - 34497337
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| |||||||    
T  34497285 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaactt 34497337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 55199769 - 55199733
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    |||||||||||||||||||||||| |||| |||||||    
T  55199769 tatgagcaaccatgttcgcttgtctcctaacaaactt 55199733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 464 - 364
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 117  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| ||||  | |||||||||||||||    
T  464 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataactgaaaaataatattagaaa 365  T
Q  118 c 118  Q
    |    
T  364 c 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 56065907 - 56065807
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 117  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| ||||  | |||||||||||||||    
T  56065907 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataactgaaaaataatattagaaa 56065808  T
Q  118 c 118  Q
    |    
T  56065807 c 56065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 51259437 - 51259554
Alignment:
Q  13 aatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatatt 112  Q
    |||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |    
T  51259437 aataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatact 51259536  T
Q  113 agaaactatgacataaaa 130  Q
    |||||| || ||||||||    
T  51259537 agaaacaataacataaaa 51259554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 49951587 - 49951487
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 117  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||    
T  49951587 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaa 49951488  T
Q  118 c 118  Q
    |    
T  49951487 c 49951487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 51734885 - 51734985
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 117  Q
    ||||||||||| |  |||||||||||||||||| |||||| |||| ||||||| |  || |||| ||||||| ||| ||||| | |||||||| ||||||    
T  51734885 gccgccctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttggaatgtaaagataacagataaataatactagaaa 51734984  T
Q  118 c 118  Q
    |    
T  51734985 c 51734985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 29655581 - 29655688
Alignment:
Q  20 cgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaact 119  Q
    ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| || || |||| | ||||| ||| || |  | |||||||| |||||||     
T  29655581 cgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagtggaaatgtaaagatagctgataaataatactagaaaca 29655680  T
Q  120 atgacata 127  Q
    || |||||    
T  29655681 ataacata 29655688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 37245766 - 37245865
Alignment:
Q  19 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  37245766 ccgccctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 37245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 28426442 - 28426405
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  28426442 gtatgagcaaccatgttcgcttgtctcctaacaaactt 28426405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 32576976 - 32577013
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  32576976 gtatgagcaaccatgttcgcttgtctcctaacaaactt 32577013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 33582961 - 33582849
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 117  Q
    |||||| ||||||| || |||||| |||||||||||||||||||   ||||||||  |||||||  | |||| || |||| |||||  |||||  |||||    
T  33582961 gccgccttagcaagagtgtgagcagccatgttcgcttgtcgcct---aaactttacctcaaagttaggatgtaaaactaaaatagacttaataagagaaa 33582865  T
Q  118 ctatgacataaaactc 133  Q
    ||| ||||| ||||||    
T  33582864 ctaagacatgaaactc 33582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 44936011 - 44936104
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 127  Q
    ||||||||||||||||||||||||  ||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| || |||||    
T  44936011 tatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttggaatgtaaagataactgataaataataatagaaacaataacata 44936104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 49119328 - 49119365
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  49119328 gtatgagcaaccatgttcgcttgtctcctaacaaactt 49119365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 41835240 - 41835324
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||| ||||||||||||||||| |||| ||||||| || || || | ||||||| ||| ||||  | |||||||| |||||||    
T  41835240 tatgaggaaccatgttcgcttgtctcctaacaaacttcatctcgaaattggaatgtaaagataactgataaataatactagaaac 41835324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 13415296 - 13415245
Alignment:
Q  19 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    |||||||||| |  ||||||||||||||||||||||||| ||||||||||||    
T  13415296 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctagcaaactt 13415245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 477971 - 478069
Alignment:
Q  20 cgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  |  |||| ||||||| ||| ||||  | ||||||||||||||||    
T  477971 cgccctagctaaggtatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaagataactgataaataatattagaaac 478069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 8670227 - 8670312
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacataga 103  Q
    |||||||||| ||| || |||||||||||||| | |||||||||| |||||||||  ||||||| || |||| || |||| |||||    
T  8670227 gccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaaactttacctcaaagttgggatgtaaaactaaaataga 8670312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 7127496 - 7127388
Alignment:
Q  19 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||| |  |||||||||| |||||||||||||| |||| ||||||| |  ||||||| ||||||| ||| ||||  | |||||||| | |||||    
T  7127496 ccgccctagctaaagtatgagcaatcatgttcgcttgtctcctaacaaacttcacatcaaagttggaatgtaaagataactgataaataatacttgaaac 7127397  T
Q  119 tatgacata 127  Q
     || |||||    
T  7127396 aataacata 7127388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 11870523 - 11870486
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  11870523 gtatgagcaaccatgttcgcttgtctcctaacaaactt 11870486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 16732206 - 16732107
Alignment:
Q  19 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  16732206 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 16732107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 17710340 - 17710241
Alignment:
Q  19 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  17710340 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 17710241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 6056282 - 6056375
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacataga 103  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||| |||| | ||||||| |  ||||||| ||||  | ||||||| |||||    
T  6056282 aagaacatgccgccctagcaatcgtatgaacaaccatgttcgcttgacgcccaacaaacttcacctcaaagttggaaaataaagctaatataga 6056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 9328530 - 9328615
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  9328530 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaaagataactgataaataatactagaaac 9328615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24139285 - 24139233
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24139285 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24139233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24251713 - 24251661
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24251713 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24251661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 28598135 - 28598195
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    |||||||||||||||||||||  ||||||||| ||||||| ||||| |||||  |||||||    
T  28598135 aagaatatgccgccctagcaatcgtatgagcagccatgtttgcttgacgcctgacaaactt 28598195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 44481361 - 44481309
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  44481361 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 44481309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 29200869 - 29200968
Alignment:
Q  19 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  29200869 ccgccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 29200968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 30824422 - 30824516
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 127  Q
    |||||||||||||||||||||| || |||| ||||||| |  ||||||| ||||||| ||| ||||  | |||||| | ||||||| || |||||    
T  30824422 gtatgagcaaccatgttcgcttatctcctaacaaacttcacttcaaagttggaatgtaaagataactgataaataagactagaaacaataacata 30824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 22289515 - 22289415
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 117  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| ||||| | |  || |||| ||||||| ||| ||||  | |||||||| ||||||    
T  22289515 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacatcacctcgaagttggaatgtaaagataactgaaaaataatactagaaa 22289416  T
Q  118 c 118  Q
    |    
T  22289415 c 22289415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 9710214 - 9710129
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  9710214 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 9710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 34695817 - 34695869
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34695817 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34695869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 34718229 - 34718281
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34718229 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34718281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 88833 - 88753
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaac 98  Q
    ||||||||||| |  ||||||||||||||||||||||||| || |  |||||| | ||  |||| ||||||| ||||||||    
T  88833 gccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgtaaagctaac 88753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 20205237 - 20205177
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||| || |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  20205237 aagaataggctgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 20205177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 26597386 - 26597482
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaa 130  Q
    |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||   | |||||||| ||||||| || ||||||||    
T  26597386 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataattgaaaaataatactagaaacaataacataaaa 26597482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 31908324 - 31908409
Alignment:
Q  33 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 118  Q
    ||||||||||||||||| | || ||| ||| ||||||| || ||||||| | ||||||||| ||||  | ||||||||||| ||||    
T  31908324 gtatgagcaaccatgtttgtttatcgactaacaaacttcatctcaaagttgaaatgtgaagataactgataaataatattataaac 31908409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 4268381 - 4268329
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 62  Q
    ||||| ||||||||||||  |  ||||||||||||||||||||||||| ||||    
T  4268381 aagaacatgccgccctagataaagtatgagcaaccatgttcgcttgtctccta 4268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 8388344 - 8388308
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8388344 tatgagcaaccatgttcgcttgtctcctaacaaactt 8388308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 22767178 - 22767238
Alignment:
Q  10 aagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||| |||||||| |||| |  ||||||||||||||||||| ||||| |||| |||||||    
T  22767178 aagaacatgccgccttagctaaagtatgagcaaccatgttcgtttgtctcctaacaaactt 22767238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 23075090 - 23075054
Alignment:
Q  34 tatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    |||||||||||||||||||||||| |||| |||||||    
T  23075090 tatgagcaaccatgttcgcttgtctcctaacaaactt 23075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 25731082 - 25731030
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 70  Q
    ||||||||||| |  |||||||||||||||||||||| || |||| |||||||    
T  25731082 gccgccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaactt 25731030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 13393 - 13293
Alignment:
Q  18 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 117  Q
    |||||||||||||| ||  ||||| |||||||||||||||| ||| |||||||||  ||||||| || |||| || |||| |||||  |||||  |||||    
T  13393 gccgccctagcaagagt--gagcagccatgttcgcttgtcgtctaacaaactttacctcaaagttgggatgtaaaactaaaatagacttaataagagaaa 13296  T
Q  118 cta 120  Q
    |||    
T  13295 cta 13293  T

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