View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_24 (Length: 315)

Name: NF5176_low_24
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_24
NF5176_low_24
[»] chr6 (1 HSPs)
chr6 (243-306)||(26015794-26015857)
[»] chr4 (1 HSPs)
chr4 (243-306)||(56110028-56110091)
[»] chr8 (2 HSPs)
chr8 (5-52)||(18107096-18107143)
chr8 (17-78)||(18107041-18107102)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 26015857 - 26015794
Alignment:
Q  243 aagacaattaagtgaaaattcaaaatgcatctactaactaaatattaaatcacctaagaataat 306  Q
    ||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  26015857 aagacaattagttgaaaactcaaaatgtatctactaactaaatattaaatcacctaagaataat 26015794  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 56110091 - 56110028
Alignment:
Q  243 aagacaattaagtgaaaattcaaaatgcatctactaactaaatattaaatcacctaagaataat 306  Q
    ||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  56110091 aagacaattagttgaaaactcaaaatgtatctactaactaaatattaaatcacctaagaataat 56110028  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 18107096 - 18107143
Alignment:
Q  5 ttttatgaatgactgattttatattccccggcatacatagttcagctt 52  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18107096 ttttatgaatgactgattttatattccccagcatacatagttcagctt 18107143  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 18107041 - 18107102
Alignment:
Q  17 ctgattttatattccccggcatacatagttcagcttctctgtcttagacaaaaggttttatg 78  Q
    ||||||||||||||| | |||||||||||||||||||||| | |||||||| || |||||||    
T  18107041 ctgattttatattcctcagcatacatagttcagcttctctattttagacaatagtttttatg 18107102  T

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