View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_26 (Length: 314)

Name: NF5176_low_26
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_26
NF5176_low_26
[»] chr7 (4 HSPs)
chr7 (19-311)||(7237756-7238045)
chr7 (85-203)||(23113833-23113951)
chr7 (125-222)||(29428946-29429043)
chr7 (251-286)||(23113974-23114009)
[»] chr8 (4 HSPs)
chr8 (28-311)||(22535894-22536169)
chr8 (28-311)||(22531209-22531484)
chr8 (37-311)||(25993815-25994081)
chr8 (175-224)||(36549387-36549436)
[»] chr5 (3 HSPs)
chr5 (31-311)||(13191640-13191912)
chr5 (188-222)||(16597673-16597707)
chr5 (146-206)||(4943585-4943645)
[»] scaffold0097 (1 HSPs)
scaffold0097 (28-311)||(21346-21621)
[»] chr2 (2 HSPs)
chr2 (28-311)||(20717509-20717784)
chr2 (146-222)||(28219076-28219152)
[»] chr6 (3 HSPs)
chr6 (28-311)||(33091079-33091355)
chr6 (125-222)||(19694555-19694652)
chr6 (121-222)||(10871257-10871358)
[»] chr3 (7 HSPs)
chr3 (31-311)||(49368288-49368564)
chr3 (31-311)||(20983186-20983447)
chr3 (133-223)||(14567889-14567979)
chr3 (135-197)||(17575791-17575853)
chr3 (183-223)||(35231809-35231849)
chr3 (146-222)||(42029280-42029356)
chr3 (169-222)||(40024845-40024898)
[»] chr1 (4 HSPs)
chr1 (31-311)||(30190727-30190989)
chr1 (31-286)||(31991576-31991822)
chr1 (125-206)||(19337655-19337736)
chr1 (183-222)||(35306754-35306793)
[»] scaffold0402 (1 HSPs)
scaffold0402 (125-206)||(717-798)
[»] scaffold0039 (1 HSPs)
scaffold0039 (146-222)||(56974-57050)
[»] chr4 (2 HSPs)
chr4 (181-222)||(48084775-48084816)
chr4 (146-222)||(41809887-41809963)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 7238045 - 7237756
Alignment:
Q  19 gtcaccggtctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatg 117  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||||    
T  7238045 gtcaccagtctaaggctctgtttggattgatgggttgtagtggaatggaatggaatggaatgtgatggtatataataaaatttcattgtttggattgatg 7237946  T
Q  118 ggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  7237945 ggatgtaaatggaacggaatggaacacaatggaatcaattccattctatatcactcaatccttcaatttctcattcccccaaatttgggaggtatccaat 7237846  T
Q  218 ggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7237845 ggaataaaacttgtgtctttaaattttac----tattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 7237756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 23113833 - 23113951
Alignment:
Q  85 ggtatataataaaattccattgttggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaat 184  Q
    |||||||||| ||||||  |  ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||||| ||||||    
T  23113833 ggtatataattaaattcgttgtttggattgatgggatgtaaatggaatggaatggaacacaatggaaccaattccattcaataccactcaatctttcaat 23113932  T
Q  185 ttctcattccccccaattt 203  Q
    |||||||| ||||||||||    
T  23113933 ttctcatttcccccaattt 23113951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 29428946 - 29429043
Alignment:
Q  125 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    ||||||| |||||| ||||  |||||||| ||||||||| ||| |||||  || | |||||| |||||||| ||||||||||  ||||||||||||||    
T  29428946 aatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctccaatttggggtgtatgcaatggaat 29429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 23113974 - 23114009
Alignment:
Q  251 tattctaccctcattttatttgcctcttcctctact 286  Q
    ||||||||||||||||||||||||||||||||||||    
T  23113974 tattctaccctcattttatttgcctcttcctctact 23114009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 28 - 311
Target Start/End: Complemental strand, 22536169 - 22535894
Alignment:
Q  28 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 126  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  22536169 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 22536075  T
Q  127 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 226  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  22536074 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 22535975  T
Q  227 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  22535974 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 22535894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 28 - 311
Target Start/End: Complemental strand, 22531484 - 22531209
Alignment:
Q  28 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 126  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  22531484 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 22531390  T
Q  127 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 226  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  22531389 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 22531290  T
Q  227 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| |||||| |||||||||||    
T  22531289 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttaaacacgttctt 22531209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 37 - 311
Target Start/End: Complemental strand, 25994081 - 25993815
Alignment:
Q  37 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 135  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  25994081 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 25993987  T
Q  136 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 235  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  25993986 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 25993887  T
Q  236 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  25993886 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 25993815  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 36549436 - 36549387
Alignment:
Q  175 atccttcaatttctcattccccccaatttgggaggtatgcaatggaataa 224  Q
    ||||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  36549436 atccttcaatttctctttccccccaattcagggtgtatgcaatggaataa 36549387  T

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Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 31 - 311
Target Start/End: Complemental strand, 13191912 - 13191640
Alignment:
Q  31 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 129  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| ||||    
T  13191912 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatgg 13191818  T
Q  130 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 229  Q
    || |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||    
T  13191817 aatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaattt 13191718  T
Q  230 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
    ||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  13191717 gtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 13191640  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 16597707 - 16597673
Alignment:
Q  188 tcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||||||||||||||| ||||||||||||||||||    
T  16597707 tcattccccccaatttaggaggtatgcaatggaat 16597673  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 4943585 - 4943645
Alignment:
Q  146 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 206  Q
    |||||| | ||||||||| ||| |||||| |||||||||||  |||||| |||||||||||    
T  4943585 atggaacccattccatccaataccactcattccttcaattttccattccacccaatttggg 4943645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 28 - 311
Target Start/End: Complemental strand, 21621 - 21346
Alignment:
Q  28 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 126  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  21621 ctaaggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 21527  T
Q  127 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 226  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  21526 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 21427  T
Q  227 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  21426 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 21346  T

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Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 28 - 311
Target Start/End: Complemental strand, 20717784 - 20717509
Alignment:
Q  28 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 126  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  20717784 ctaaggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 20717690  T
Q  127 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 226  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  20717689 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 20717590  T
Q  227 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  20717589 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 20717509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 28219076 - 28219152
Alignment:
Q  146 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  28219076 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 28219152  T

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Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 28 - 311
Target Start/End: Original strand, 33091079 - 33091355
Alignment:
Q  28 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatggg-atgtaa 125  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||| |||||     
T  33091079 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatggggatgtac 33091173  T
Q  126 atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa 225  Q
     ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  33091174 gtggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa 33091273  T
Q  226 acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
    | ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  33091274 atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 33091355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 19694652 - 19694555
Alignment:
Q  125 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    ||||||| ||||||||||| ||||||||| ||||||||| ||  ||   |||||||| |||| |||||||||||||||||||  | ||||||||||||    
T  19694652 aatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaatttggggtgcatgcaatggaat 19694555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 10871257 - 10871358
Alignment:
Q  121 tgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatgga 220  Q
    ||||| ||||| | ||||||||| ||||||| | ||| ||||| ||| |||||| || | ||| || ||||||||| |||||||||| ||||||||||||    
T  10871257 tgtaattggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatgga 10871356  T
Q  221 at 222  Q
    ||    
T  10871357 at 10871358  T

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Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 31 - 311
Target Start/End: Complemental strand, 49368564 - 49368288
Alignment:
Q  31 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgg----gatgtaa 125  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||    ||||||     
T  49368564 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatggaatggatgtac 49368470  T
Q  126 atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa 225  Q
    |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||    
T  49368469 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattctccccaatttgggaggtatccaatggaatgaa 49368370  T
Q  226 acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
    | ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  49368369 atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 49368288  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 31 - 311
Target Start/End: Original strand, 20983186 - 20983447
Alignment:
Q  31 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 129  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| ||||||||||||||           
T  20983186 aggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatg------- 20983273  T
Q  130 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 229  Q
        ||||||||  ||||| || ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| ||    
T  20983274 ----gaatggaatgcaatgaaaccaattccattctataccactcaatccttcaatttcttattccccccaatttgggaggtatccaatgaaatgaaattt 20983369  T
Q  230 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
    ||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  20983370 gtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 20983447  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 14567889 - 14567979
Alignment:
Q  133 ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaata 223  Q
    ||||||||| |||||||||   ||||||||| ||| ||  ||| |||||||||| |||||||||||||||||||  |||| ||||||||||    
T  14567889 ggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaata 14567979  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 17575791 - 17575853
Alignment:
Q  135 aatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccc 197  Q
    ||||||||| ||||||||  ||||||||  |||||||||||||||||||||| ||||||||||    
T  17575791 aatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccccc 17575853  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 35231849 - 35231809
Alignment:
Q  183 atttctcattccccccaatttgggaggtatgcaatggaata 223  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  35231849 atttttcattccccccaatttgggaggtatgcaatggaata 35231809  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 42029356 - 42029280
Alignment:
Q  146 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  42029356 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 42029280  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 40024898 - 40024845
Alignment:
Q  169 cactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  40024898 cactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaat 40024845  T

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Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 31 - 311
Target Start/End: Complemental strand, 30190989 - 30190727
Alignment:
Q  31 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 129  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| ||||    
T  30190989 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatgg 30190895  T
Q  130 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 229  Q
    || ||||||||||          ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||    
T  30190894 aatggaatggaac----------caattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaattt 30190805  T
Q  230 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 311  Q
    ||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  30190804 gtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 30190727  T

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Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 31991822 - 31991576
Alignment:
Q  31 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 129  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||| ||  ||||     ||||||||||||| ||||||||| |||||||||||    
T  31991822 aggctctgtttggattgatgggttgtagtggaatggaatggaatgtaatgtcattttata-----aaattccattgtttggattgatgagatgtaaatgg 31991728  T
Q  130 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 229  Q
    || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  |||||    
T  31991727 aatggaatggaacacaatggaatcaattccattctataccactcattccttcaattcctcattccccccaatttggg-ggtatccaatggaatggaactt 31991629  T
Q  230 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 286  Q
    ||||||| |||| ||||    |||||||||||||||||||||| |||||||||||||    
T  31991628 gtgtcttgaaatattac----tattctaccctcattttatttgtctcttcctctact 31991576  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 19337655 - 19337736
Alignment:
Q  125 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 206  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  19337655 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 19337736  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 35306793 - 35306754
Alignment:
Q  183 atttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  35306793 atttttcattccccccaatttgggaggtatgcaatggaat 35306754  T

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Target: scaffold0402 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 717 - 798
Alignment:
Q  125 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 206  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  717 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 798  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 56974 - 57050
Alignment:
Q  146 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||||| ||||||||||| ||| |||||| |   ||| ||| ||||||||||||| ||||||||||| |||||||||    
T  56974 atggaaccaattccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaat 57050  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 48084775 - 48084816
Alignment:
Q  181 caatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||||| ||||||||||||||||||||||||| | |||||||    
T  48084775 caatttttcattccccccaatttgggaggtatacgatggaat 48084816  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 41809963 - 41809887
Alignment:
Q  146 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 222  Q
    |||||| | |||||||  |||| |||||| || | ||||||  ||||||||||||||||||| |||| |||||||||    
T  41809963 atggaacccattccatgatataccactcattcatccaattttccattccccccaatttgggatgtattcaatggaat 41809887  T

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