View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_32 (Length: 293)
Name: NF5176_low_32
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 11479238 - 11479506
Alignment:
| Q |
9 |
gaagaatatttaaattcccttcttttagtctgtttggtagactgtagcggatagcagacgaacttataactgacagcagataagcaagcatattgaagtt |
108 |
Q |
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| T |
11479238 |
gaagaatatttaaattcccttcttttagtctgtttggtagactgtagcggatagcagacgaacttataactgacagcagataagcaagcatattgaagtt |
11479337 |
T |
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| Q |
109 |
gtagctcaaaaacggtataagtttgtgaaaaaacgctataagctcttaagagaaaactgttatcaaatagttctactttgattatatgagcttatatgct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479338 |
gtagctcaaaaacggtataagtttgtgaaaaaacgctataagctcttaagagaaaactgttatcaaatagttctactttgattatatgagcttatatgct |
11479437 |
T |
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| Q |
209 |
ataagatgtctgctataagctaacggttcagccttgccaaacaatgcattagtctaaagacgagttaac |
277 |
Q |
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| T |
11479438 |
ataagatgtctgctataagctaacggttcagccttgccaaacaatgcattagtctaaagacgagttaac |
11479506 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 6036087 - 6036133
Alignment:
| Q |
180 |
tctactttgattatatgagcttatatgctataagatgtctgctataa |
226 |
Q |
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| T |
6036087 |
tctactttgactatatgagcttatatgttataagaggtctgctataa |
6036133 |
T |
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