View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_34 (Length: 289)
Name: NF5176_low_34
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_34 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 48099610 - 48099889
Alignment:
| Q |
1 |
caatcagttgtcccctataccttgaaaccacatatcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctg |
100 |
Q |
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| T |
48099610 |
caatcagttgtcctctataccttgaaaccacagatcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctg |
48099709 |
T |
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| Q |
101 |
aaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctgg |
200 |
Q |
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| T |
48099710 |
aaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctgg |
48099809 |
T |
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| Q |
201 |
ccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaaccatctctg |
280 |
Q |
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| T |
48099810 |
ccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaaccatctctg |
48099889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 48066672 - 48066944
Alignment:
| Q |
8 |
ttgtcccctataccttgaaaccacatatcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtt |
107 |
Q |
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| T |
48066672 |
ttgtccactatatcttgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctt |
48066771 |
T |
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| Q |
108 |
tcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaa |
207 |
Q |
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| T |
48066772 |
tcatcgtcccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcatggcatcaggaatagtatagttttcctggccttgaa |
48066871 |
T |
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| Q |
208 |
atctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaaccatctctg |
280 |
Q |
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| T |
48066872 |
ttttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaaccatttctg |
48066944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 48062576 - 48062855
Alignment:
| Q |
1 |
caatcagttgtcccctataccttgaaaccacatatcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctg |
100 |
Q |
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|||||| |||||| |||||||||| ||||| || | |||||||||||||| |||| ||||||||| |||||||| ||| || | |||||| ||| || |
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| T |
48062576 |
caatcaattgtcctttataccttgagaccacggatttcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttg |
48062675 |
T |
|
| Q |
101 |
aaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctgg |
200 |
Q |
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| T |
48062676 |
acgtctttcactgtcccacaaaatgttatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtatagttttcatgg |
48062775 |
T |
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| Q |
201 |
ccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaaccatctctg |
280 |
Q |
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| T |
48062776 |
ccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctg |
48062855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 48106292 - 48106485
Alignment:
| Q |
82 |
acttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgg |
181 |
Q |
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| T |
48106292 |
acttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgcatctga |
48106391 |
T |
|
| Q |
182 |
gatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaaccat |
275 |
Q |
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| T |
48106392 |
gatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccat |
48106485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 50231305 - 50231396
Alignment:
| Q |
1 |
caatcagttgtcccctataccttgaaaccacatatcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccat |
92 |
Q |
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| T |
50231305 |
caatcaattgtccactatatcttgaaaccaaaaatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttaagccat |
50231396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 927 - 849
Alignment:
| Q |
1 |
caatcagttgtcccctataccttgaaaccacatatcttattctttttgcagccgcttttcgtaattcttcaggagatag |
79 |
Q |
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|||||| |||||| ||||| |||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
927 |
caatcaattgtccactatatcttgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag |
849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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