View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_36 (Length: 282)
Name: NF5176_low_36
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5837215 - 5837446
Alignment:
| Q |
1 |
catcaggccatgacaaacatggagaacacgcataaataatatagcaattaggctttatggctgtgaagtccagatacactgaatatgaagttgtatccgt |
100 |
Q |
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| T |
5837215 |
catcaggccatgacaaacatggagaacacacataaataatatagcaattaggctttatggctgtgaagtccagatacattaaatatgaagttgtatccgt |
5837314 |
T |
|
| Q |
101 |
atcggataccgatactttttccatattcacagttactcgtcaatacctatctacaaagtactcgaatcaatttatagtttaaaaaattatttatctatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5837315 |
atcggataccgatactttttccatattcacagttactcgtcaatacctatccacaaagtactcgaatcaatttatagtttaaaaaattatttatctatac |
5837414 |
T |
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| Q |
201 |
ttgtgggctaccttaaaaatacataaggatac |
232 |
Q |
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|||||| |||| ||||||||||||||||||| |
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| T |
5837415 |
ttgtggaataccctaaaaatacataaggatac |
5837446 |
T |
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