View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_4 (Length: 585)
Name: NF5176_low_4
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 11 - 570
Target Start/End: Original strand, 564155 - 564714
Alignment:
| Q |
11 |
atataaacaggagggtgagaaacattgatgctttcttcaatcaaggctttaactgcttgtgattccaattctacaaagctattgactaatataccgtcgc |
110 |
Q |
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| T |
564155 |
atataaacaggagggtgagaaacattgatgctttcttcaatcaaggctttaactgcttgtgattccaattctacaaagctattgactaatataccgtcgc |
564254 |
T |
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| Q |
111 |
aaagatttatccctttggaacggagaagaaaatggttgtaagactcactattcctgtcttgaaatgaagatggaagatcggttccttgaatcggtacaca |
210 |
Q |
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| T |
564255 |
aaagatttatccctttggaacggagaagaaaatggttgtaagactcactattcctgtcttgaaatgaagatggaagatcggttccttgaatcggtacaca |
564354 |
T |
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| Q |
211 |
acctgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaaacaaagtgatagcactgtggctgat |
310 |
Q |
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| T |
564355 |
acctgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaaacaaagtgataatactgtggctgat |
564454 |
T |
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| Q |
311 |
gaaggaaaatatgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagctattatagcaactagttttgatgttt |
410 |
Q |
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| T |
564455 |
gaaggaaaatatgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagctattatagcaactagttttgatgttt |
564554 |
T |
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| Q |
411 |
ttgttttcaatgcatcaatgatagatggcatagttagagacattgaaagaggaagtttgagtgtagggacagtttgtggtggcaagttgattggtggaag |
510 |
Q |
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| T |
564555 |
ttgttttcaatgcatcaatgatatatggcatagttagagacattgaaagaggaagtttgagtgtagggacagtttgtggtggcaagttgattggtggaag |
564654 |
T |
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| Q |
511 |
aacaatggtatctacattgagagaagaaagagaagcaataatggatttggaagcattgga |
570 |
Q |
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| T |
564655 |
aacaatggtatctacattgagagaagaaagagaagcaataatggatttggaagcattgga |
564714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 874024 - 874093
Alignment:
| Q |
214 |
tgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatga |
283 |
Q |
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| T |
874024 |
tgggattatgattggttcttgcaagtctttaaattcaccagaaattattttatctagaacttttaaatga |
874093 |
T |
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