View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5176_low_40 (Length: 272)
Name: NF5176_low_40
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_40 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 256
Target Start/End: Complemental strand, 8816851 - 8816647
Alignment:
| Q |
52 |
atttagaaattgattagaactcgaattgttgtcaaaaataagaaatggtgtgttttggttctatgagagaggtgaaaccatagagagttttactatttta |
151 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8816851 |
atttagaaattgattagaactcgacttgttgtcaaaaataagaaatggtgtgttatggttctatgagagaggtgaaaccgtagagagttttactatttta |
8816752 |
T |
|
| Q |
152 |
tgctatctgctgcatgcttaatgctagttttgaaagtcgcaatgttttggtttgtttctttttcttcttcaattgttgtttgctagggtttgatggtaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8816751 |
tgctatctgctgcatgcttaatgctagttttcaaagtcgcaatgttttggtttgtttctttttcttcttcaattgttgtttgctagggtttgatggtaat |
8816652 |
T |
|
| Q |
252 |
tgttg |
256 |
Q |
| |
|
||||| |
|
|
| T |
8816651 |
tgttg |
8816647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 52 - 256
Target Start/End: Original strand, 8620458 - 8620662
Alignment:
| Q |
52 |
atttagaaattgattagaactcgaattgttgtcaaaaataagaaatggtgtgttttggttctatgagagaggtgaaaccatagagagttttactatttta |
151 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8620458 |
atttagaaattgattagaactcgacttgtagtcaaaagtaagaaatggtgtgttttggttctattagagaggtgaaaccaaagagagttttactatttta |
8620557 |
T |
|
| Q |
152 |
tgctatctgctgcatgcttaatgctagttttgaaagtcgcaatgttttggtttgtttctttttcttcttcaattgttgtttgctagggtttgatggtaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8620558 |
tgctatctgctgcatgcttaatgctagttttgagagtcgcaatgttttggtttgtttctttttcttcttcaattgttgtttgctagggtttgatggtaat |
8620657 |
T |
|
| Q |
252 |
tgttg |
256 |
Q |
| |
|
||||| |
|
|
| T |
8620658 |
tgttg |
8620662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 52 - 256
Target Start/End: Complemental strand, 8817867 - 8817663
Alignment:
| Q |
52 |
atttagaaattgattagaactcgaattgttgtcaaaaataagaaatggtgtgttttggttctatgagagaggtgaaaccatagagagttttactatttta |
151 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8817867 |
atttagaaattgattagaactcgacttgttgtcaaaagtaagaaatggtgtgttttggttctattagagaggtgaaaccaaagagagttttactatttta |
8817768 |
T |
|
| Q |
152 |
tgctatctgctgcatgcttaatgctagttttgaaagtcgcaatgttttggtttgtttctttttcttcttcaattgttgtttgctagggtttgatggtaat |
251 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8817767 |
tgctatctgctgcatgcctaatgctggttttgagagtcacaatgttttggtttgtttctttttcttcttcaattgttgtttgctagggcttgatggtaat |
8817668 |
T |
|
| Q |
252 |
tgttg |
256 |
Q |
| |
|
||||| |
|
|
| T |
8817667 |
tgttg |
8817663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 8420726 - 8420830
Alignment:
| Q |
62 |
tgattagaactcgaattgttgtcaaaaataagaaatggtgtgttttggttctatgagagaggtgaaaccatagagagttttactattttatgctatctgc |
161 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
8420726 |
tgattagaactcaacttgttgtcaaaagtaagaagtggtgtgttttggttctattagagaggtggcacc----agagttttactattttattctatctgc |
8420821 |
T |
|
| Q |
162 |
tgcatgctt |
170 |
Q |
| |
|
||||||||| |
|
|
| T |
8420822 |
tgcatgctt |
8420830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University